RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 IRF2BPLQ9H1B7 796 aa17.31■□□□□ 0.36
USP48-204ENST00000400301 CENPMQ9NSP4 180 aa17.31■□□□□ 0.36
USP48-204ENST00000400301 PDCD11Q14690 1871 aaKnown RBP17.31■□□□□ 0.36
USP48-204ENST00000400301 OR2B3O76000 313 aa17.31■□□□□ 0.36
USP48-204ENST00000400301 LRRC56Q8IYG6 542 aaPredicted RBP17.31■□□□□ 0.36
USP48-204ENST00000400301 OR5M3Q8NGP4 307 aa17.31■□□□□ 0.36
USP48-204ENST00000400301 OPALINQ96PE5 141 aa17.31■□□□□ 0.36
USP48-204ENST00000400301 SLC2A4RGQ9NR83 387 aa17.31■□□□□ 0.36
USP48-204ENST00000400301 TBC1D29Q9UFV1 150 aa17.31■□□□□ 0.36
USP48-204ENST00000400301 A0A1W2PQ72 361 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 GP1BBP13224 206 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 HOXD12P35452 270 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 LBX1P52954 281 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 ELOCQ15369 112 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 OR9A4Q8NGU2 314 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 NARS2Q96I59 477 aaKnown RBP17.3■□□□□ 0.36
USP48-204ENST00000400301 C4orf36Q96KX1 117 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 CDCA3Q99618 268 aaPredicted RBP17.3■□□□□ 0.36
USP48-204ENST00000400301 PDE7BQ9NP56 450 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 FCMRO60667 390 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 TRIM3O75382 744 aaPredicted RBP17.3■□□□□ 0.36
USP48-204ENST00000400301 GAS6Q14393 721 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 OR1E3Q8WZA6 343 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 RASD1Q9Y272 281 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 YARS2Q9Y2Z4 477 aaKnown RBP17.3■□□□□ 0.36
USP48-204ENST00000400301 PCDHGB2Q9Y5G2 931 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 FAM25EA8MYX2 175 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 FUT1P19526 365 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 FPR3P25089 353 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 PTPN6P29350 595 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 ACSM3Q53FZ2 586 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 NTNG1Q9Y2I2 539 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 MRPS17Q9Y2R5 130 aaKnown RBP17.3■□□□□ 0.36
USP48-204ENST00000400301 POM121BA6NF01 834 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 NPIPB8E9PQR5 432 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 MAPK3P27361 379 aaPredicted RBP17.3■□□□□ 0.36
USP48-204ENST00000400301 ZDHHC1Q8WTX9 485 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 CNRIP1Q96F85 164 aaPredicted RBP17.3■□□□□ 0.36
USP48-204ENST00000400301 MED17Q9NVC6 651 aa17.3■□□□□ 0.36
USP48-204ENST00000400301 ARRDC5A6NEK1 342 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 ERP29P30040 261 aaKnown RBP17.29■□□□□ 0.36
USP48-204ENST00000400301 KRT77Q7Z794 578 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 FBXL6Q8N531 539 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 PIGUQ9H490 435 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 PSMD9O00233 223 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 C21orf58P58505 322 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 HSF2Q03933 536 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 BCL2L15Q5TBC7 163 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 LEG1Q6P5S2 330 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 WDR34Q96EX3 536 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 UBQLN3Q9H347 655 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 RXFP3Q9NSD7 469 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 MRPL15Q9P015 296 aaKnown RBP17.29■□□□□ 0.36
USP48-204ENST00000400301 SLC35A3Q9Y2D2 325 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 PIP5K1CO60331 668 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 PRAMEF2O60811 474 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 AHSA1O95433 338 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 SNRPD2P62316 118 aaKnown RBP17.29■□□□□ 0.36
USP48-204ENST00000400301 IL20RBQ6UXL0 311 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 PIAS4Q8N2W9 510 aaPredicted RBP17.29■□□□□ 0.36
USP48-204ENST00000400301 APH1BQ8WW43 257 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 NRTNQ99748 197 aa17.29■□□□□ 0.36
USP48-204ENST00000400301 AK6Q9Y3D8 172 aaKnown RBP17.29■□□□□ 0.36
USP48-204ENST00000400301 LOC102723532A0A0G2JNH3 316 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 HMX3A6NHT5 357 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 TSFMP43897 325 aaKnown RBP17.28■□□□□ 0.36
USP48-204ENST00000400301 PITPNBP48739 271 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 NRG3P56975 720 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 GPR18Q14330 331 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 DUSP5Q16690 384 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 NXNL2Q5VZ03 156 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 TTLL10Q6ZVT0 673 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 GDPD3Q7L5L3 318 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 NEURL2Q9BR09 285 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 HHATLQ9HCP6 504 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 BCL2L10Q9HD36 194 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 SLAMF7Q9NQ25 335 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 OBP2AQ9NY56 170 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 ERVK-19Q9WJR5 959 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 MAU2Q9Y6X3 613 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 H0Y8X5 98 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 IFNA6P05013 189 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 CTXN1P60606 82 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 THOC7Q6I9Y2 204 aaKnown RBP17.28■□□□□ 0.36
USP48-204ENST00000400301 KIAA1211LQ6NV74 962 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 AMER3Q8N944 861 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 GPR32P1Q8NGA4 272 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 TPSD1Q9BZJ3 242 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 RFXAPO00287 272 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 RNF13O43567 381 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 DRD1P21728 446 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 ZNF627Q7L945 461 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 SLC35A4Q96G79 324 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 KIR3DX1Q9H7L2 352 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 FOLH1BQ9HBA9 442 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 ZNF69Q9UC07 566 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 ATG2BQ96BY7 2078 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 SLC9B1P1A6NJY1 282 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 APBB3O95704 486 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 TRMT12Q53H54 448 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms