RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 DHRS11Q6UWP2 260 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 RAD9BQ6WBX8 426 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 GPRIN3Q6ZVF9 776 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 FAM57BQ71RH2 274 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 Q7L0L9 218 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 C17orf64Q86WR6 236 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 CACUL1Q86Y37 369 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 CDK20Q8IZL9 346 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 PELI3Q8N2H9 469 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 TEX26Q8N6G2 289 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 Q8N9G6 341 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 SMRP1Q8NCR6 262 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 OR10H4Q8NGA5 316 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 OR4C15Q8NGM1 316 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 LRRC15Q8TF66 581 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 NUDCD2Q8WVJ2 157 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 FAM122AQ96E09 287 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 CXXC4Q9H2H0 198 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 LRMDAQ9H2I8 198 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 GOLPH3Q9H4A6 298 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 CCNB1IP1Q9NPC3 277 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 THSD1Q9NS62 852 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 MS4A12Q9NXJ0 267 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 ADA2Q9NZK5 511 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 PILRBQ9UKJ0 227 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 EXOGQ9Y2C4 368 aaKnown RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 SLC6A5Q9Y345 797 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 TRBV5-3A0A0A0MS03 114 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 A0A0G2JK05 382 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 A0A1W2PNV4 684 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 C5orf60A6NFR6 353 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF99A8MXY4 864 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 E7ENQ6 273 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 E9PQ18 207 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 IMPA2O14732 288 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 SIVA1O15304 175 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 GPAA1O43292 621 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 PRKAB2O43741 272 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 N4BP1O75113 896 aaKnown RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 NXPH2O95156 264 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ZBTB11O95625 1053 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ALPLP05186 524 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 T-ENOLP0DO92 83 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 PSG1P11464 419 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 EIF2S2P20042 333 aaKnown RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 TCN1P20061 433 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 YWHABP31946 246 aaKnown RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 AHRP35869 848 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 SLC1A4P43007 532 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 UQCRFS1P47985 274 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 THBS3P49746 956 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 RAB14P61106 215 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 OSTNP61366 133 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 PHEXP78562 749 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 SRSF1Q07955 248 aaKnown RBP eCLIP3.62□□□□□ -1.836e-14■■□□□ 12.8
HMGB1-204ENST00000399489 HNF4GQ14541 408 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 MOGQ16653 247 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 CLVS2Q5SYC1 327 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 OR4C11Q6IEV9 310 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 SCYL2Q6P3W7 929 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ANKRD37Q7Z713 158 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 MOB3BQ86TA1 216 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ITIH5Q86UX2 942 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 TRIM69Q86WT6 500 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM17Q86X19 198 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 PALB2Q86YC2 1186 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 MFSD6LQ8IWD5 586 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF34Q8IZ26 560 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 RCOR2Q8IZ40 523 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF781Q8N8C0 355 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 LMNTD1Q8N9Z9 388 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 RDH11Q8TC12 318 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 TANKQ92844 425 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 GLT1D1Q96MS3 346 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 TSSK3Q96PN8 268 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ERGIC2Q96RQ1 377 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 P2RY13Q9BPV8 354 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 TTYH2Q9BSA4 534 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 DCTN5Q9BTE1 182 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 MCRIP2Q9BUT9 160 aaKnown RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ANGPTL4Q9BY76 406 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 UPF3BQ9BZI7 483 aaKnown RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 NDEL1Q9GZM8 345 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 VIPAS39Q9H9C1 493 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 PAQR5Q9NXK6 330 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 GPR83Q9NYM4 423 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 RCOR3Q9P2K3 495 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-204ENST00000399489 ANAPC7Q9UJX3 599 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 IKZF3Q9UKT9 509 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 PCDHAC2Q9Y5I4 1007 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 MAGI3Q5TCQ9 1506 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 UACAQ9BZF9 1416 aa3.62□□□□□ -1.83
HMGB1-204ENST00000399489 SHISA7A6NL88 538 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 A8MXQ7 604 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 GOLGA8RI6L899 631 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 CLOCKO15516 846 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 EFNA2O43921 213 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 LRCH4O75427 683 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 PDE5AO76074 875 aa3.61□□□□□ -1.83
HMGB1-204ENST00000399489 SCELO95171 688 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms