RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 TP53INP1Q96A56 240 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 ELP4Q96EB1 424 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 FAM120BQ96EK7 910 aaKnown RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 AURKBQ96GD4 344 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 CLPTM1LQ96KA5 538 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 TRIB1Q96RU8 372 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 NODALQ96S42 347 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 KCTD14Q9BQ13 255 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 CPPED1Q9BRF8 314 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 SPATA9Q9BWV2 254 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 NXF5Q9H1B4 397 aaKnown RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 ALG2Q9H553 416 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 KAT8Q9H7Z6 458 aaKnown RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 DLL4Q9NR61 685 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 SIRT3Q9NTG7 399 aaPredicted RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 ZCCHC3Q9NUD5 404 aaKnown RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 DDX18Q9NVP1 670 aaKnown RBP9.39□□□□□ -0.91
NEDD8-202ENST00000396828 CMTM6Q9NX76 183 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 BCAP29Q9UHQ4 241 aa9.39□□□□□ -0.91
NEDD8-202ENST00000396828 NSD1Q96L73 2696 aaPredicted RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 A0A087WV62 115 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 A0A1W2PPR1 153 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 PRORSD1PA6NEY8 169 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 B4DXG7 233 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 DVL2O14641 736 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 TP53I11O14683 189 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 GSTA4O15217 222 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 GMNNO75496 209 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 HSD17B1P14061 328 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 GPX2P18283 190 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 TCN1P20061 433 aaPredicted RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 TIMP3P35625 211 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 MC3RP41968 323 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 CRATP43155 626 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 MAGEA8P43361 318 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 CORO7P57737 925 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 ADAM8P78325 824 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 TXNL4AP83876 142 aaKnown RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 BNIP2Q12982 314 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 FADDQ13158 208 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 CEACAM7Q14002 265 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 RGNQ15493 299 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 LTB4RQ15722 352 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 CYP51A1Q16850 503 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 PRICKLE4Q2TBC4 344 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 KRTAP21-3Q3LHN1 58 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 FBXL19-AS1Q494R0 122 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 ZNF628Q5EBL2 1059 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 NHSL2Q5HYW2 709 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 TBCELQ5QJ74 424 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 NSUN5P2Q63ZY6 315 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 SAXO2Q658L1 398 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 PGM2L1Q6PCE3 622 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 C6orf120Q7Z4R8 191 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 SERPINA11Q86U17 422 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 IFNEQ86WN2 208 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 LACC1Q8IV20 430 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 CLEC4FQ8N1N0 589 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 RNF148Q8N7C7 305 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 C9orf106Q8NAJ2 232 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 FAM83FQ8NEG4 500 aaPredicted RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 ADCY4Q8NFM4 1077 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 OR2T12Q8NG77 320 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 OR10A6Q8NH74 314 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 PNPT1Q8TCS8 783 aaKnown RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 ZNF675Q8TD23 568 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 KAT2AQ92830 837 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 NINJ1Q92982 152 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 HGDQ93099 445 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 CCDC124Q96CT7 223 aaKnown RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 NEURL3Q96EH8 262 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 RMND5BQ96G75 393 aaPredicted RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 MS4A4EQ96PG1 132 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 ITPAQ9BY32 194 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 MUC13Q9H3R2 512 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 ANKRA2Q9H9E1 313 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 SLC24A3Q9HC58 644 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 GALNT9Q9HCQ5 603 aa9.38□□□□□ -0.91
NEDD8-202ENST00000396828 THUMPD1Q9NXG2 353 aaKnown RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 ZNF629Q9UEG4 869 aaPredicted RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 RRP15Q9Y3B9 282 aaKnown RBP9.38□□□□□ -0.91
NEDD8-202ENST00000396828 MBD3L4A6NDZ8 208 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 MBD3L3A6NE82 208 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 TMEM247A6NEH6 219 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 MBD3L5A6NJ08 208 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 C17orf51A8MQB3 221 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 FAM220BPB1ANY3 271 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 FAM47E-STBD1D6RA91 191 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PLOD3O60568 738 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 ICOSLGO75144 302 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 COQ9O75208 318 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PPM1BO75688 479 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 BCAS2O75934 225 aaPredicted RBP9.37□□□□□ -0.91
NEDD8-202ENST00000396828 SNX4O95219 450 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 MASP1P48740 699 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PRIM2P49643 509 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 GSK3BP49841 420 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 KHKP50053 298 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 PRKAG1P54619 331 aa9.37□□□□□ -0.91
NEDD8-202ENST00000396828 MRPS35P82673 323 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms