RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HS3ST5Q8IZT8 346 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 CA13Q8N1Q1 262 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 AMER2Q8N7J2 671 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 OR52N2Q8NGI0 321 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 TEX47Q8TBZ9 253 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 LGALS12Q96DT0 336 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF354BQ96LW1 612 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 FER1L6-AS2Q96M78 137 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 OR7D2Q96RA2 312 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 MARCH7Q9H992 704 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 PRDM9Q9NQV7 894 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF221Q9UK13 617 aa9.57□□□□□ -0.88
COL6A3-205ENST00000392004 ZFC3H1O60293 1989 aaKnown RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CHD5Q8TDI0 1954 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 A0A1W2PPV9 198 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 TPOP07202 933 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CD36P16671 472 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 GGT1P19440 569 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 BSGP35613 385 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ETV5P41161 510 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CDK5R2Q13319 367 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CLPPQ16740 277 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 GARNL3Q5VVW2 1013 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 OR7G2Q8NG99 324 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 OR6N1Q8NGY5 312 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 WDR20Q8TBZ3 569 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 UBTD2Q8WUN7 234 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 FAR1Q8WVX9 515 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 DCSTAMPQ9H295 470 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ERVMER34-1Q9H9K5 563 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 MED11Q9P086 117 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 IL17BQ9UHF5 180 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 NOTOA8MTQ0 251 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 HNRNPCL2B2RXH8 293 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 DSCR3O14972 297 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 AHSA1O95433 338 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 HOXC4P09017 264 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 IGFBP5P24593 272 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 PIGAP37287 484 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 PHC1P78364 1004 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CRYZQ08257 329 aaKnown RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF630Q2M218 657 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF404Q494X3 552 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 NUP54Q7Z3B4 507 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 TRIM46Q7Z4K8 759 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 LACC1Q8IV20 430 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 STX19Q8N4C7 294 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CNEP1R1Q8N9A8 125 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ZBTB44Q8NCP5 570 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 LILRB4Q8NHJ6 448 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 SLC2A12Q8TD20 617 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 OR5B2Q96R09 309 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 G6PC3Q9BUM1 346 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 AMBRA1Q9C0C7 1298 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CBLCQ9ULV8 474 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 AP3M1Q9Y2T2 418 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 FCMRO60667 390 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ADORA3P0DMS8 318 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 OR2B6P58173 313 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CDC20Q12834 499 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 DCST2Q5T1A1 773 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CPEB2Q7Z5Q1 589 aaKnown RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 YRDCQ86U90 279 aaKnown RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 MARCH3Q86UD3 253 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 LGI4Q8N135 537 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ELP4Q96EB1 424 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 LOXL4Q96JB6 756 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 MBOAT4Q96T53 435 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 PELOQ9BRX2 385 aaKnown RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 CDADC1Q9BWV3 514 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 POLR2J3Q9H1A7 115 aaKnown RBP9.56□□□□□ -0.88
COL6A3-205ENST00000392004 MMP27Q9H306 513 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 FOLH1BQ9HBA9 442 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 IKZF2Q9UKS7 526 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 KIF26BQ2KJY2 2108 aa9.56□□□□□ -0.88
COL6A3-205ENST00000392004 ANKRD34BA5PLL1 514 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 HTR1AP08908 422 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 GPR4P46093 362 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 MVKQ03426 396 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 GAB1Q13480 694 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 DSG2Q14126 1118 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF691Q5VV52 312 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 TUBA3EQ6PEY2 450 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 KDM8Q8N371 416 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 NAXEQ8NCW5 288 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 OR51L1Q8NGJ5 315 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 KCNS3Q9BQ31 491 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 HOXD1Q9GZZ0 328 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 NXF5Q9H1B4 397 aaKnown RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 GPR83Q9NYM4 423 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 LRFN1Q9P244 771 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 PCOLCE2Q9UKZ9 415 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 CAB39Q9Y376 341 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 PLXNA3P51805 1871 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 PROM1O43490 865 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 H1F0P07305 194 aaKnown RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 CYB561P49447 251 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 EPHA4P54764 986 aa9.55□□□□□ -0.88
COL6A3-205ENST00000392004 RPP38P78345 283 aaKnown RBP9.55□□□□□ -0.88
COL6A3-205ENST00000392004 DUSP5Q16690 384 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms