RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 C17orf47Q8NEP4 570 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 MR1Q95460 341 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 SLC38A4Q969I6 547 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ZAR1LA6NP61 321 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 M0R3G1 203 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 OR5F1O95221 314 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 FADS2O95864 444 aaKnown RBP16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 CCL4P13236 92 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 MAP2K4P45985 399 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 CRISP1P54107 249 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ATP12AP54707 1039 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 DNAH14Q0VDD8 3507 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 AQP6Q13520 282 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF846Q147U1 533 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 TRAM2Q15035 370 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF141Q15928 474 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 SMN1Q16637 294 aaKnown RBP16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 MRPL14Q6P1L8 145 aaKnown RBP16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 PLEKHM3Q6ZWE6 761 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 AHSA2Q719I0 299 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 RAB11FIP2Q7L804 512 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 NINQ8N4C6 2090 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 BCORP1Q8N888 145 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 ZG16BQ96DA0 208 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 HSPBAP1Q96EW2 488 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 TAAR9Q96RI9 348 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 LPAR4Q99677 370 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 NIPSNAP1Q9BPW8 284 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 DDA1Q9BW61 102 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 WDR12Q9GZL7 423 aaKnown RBP16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 KRCC1Q9NPI7 259 aaPredicted RBP16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 TESQ9UGI8 421 aaKnown RBP16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 A4GNTQ9UNA3 340 aa16.81■□□□□ 0.28
CCDC88C-203ENST00000389856 CDHR4A6H8M9 788 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 SAGE2PA6NJ88 616 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 JMJD7P0C870 316 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 ELAVL4P26378 380 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 BMXP51813 675 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 TUBA1BP68363 451 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 INSM1Q01101 510 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 ISXQ2M1V0 245 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 MRPL2Q5T653 305 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 TMEM164Q5U3C3 297 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 CDCP2Q5VXM1 449 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 TUBA1AQ71U36 451 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 HMGN2P46Q86SG4 172 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 RBM45Q8IUH3 476 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 LACC1Q8IV20 430 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 AQP11Q8NBQ7 271 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 B3GNT7Q8NFL0 401 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 OR4D11Q8NGI4 311 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 B4GALNT2Q8NHY0 566 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 PLEKHA8Q96JA3 519 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 GAL3ST4Q96RP7 486 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 MCHR1Q99705 422 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 NUDT9Q9BW91 350 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 UCK2Q9BZX2 261 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 HMG20AQ9NP66 347 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 RLIMQ9NVW2 624 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF226Q9NYT6 803 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 DTX4Q9Y2E6 619 aa16.8■□□□□ 0.28
CCDC88C-203ENST00000389856 FFAR1O14842 300 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 TO15178 435 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 IL33O95760 270 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 EPPINO95925 133 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 IGHEP01854 428 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 PIPP12273 146 aaPredicted RBP16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 HPGDP15428 266 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 ENDOUP21128 410 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 UGT2B15P54855 530 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 PIN1Q13526 163 aaPredicted RBP16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 EBPQ15125 230 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 CCDC81Q6ZN84 652 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 Q6ZNX1 250 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 SHISA6Q6ZSJ9 500 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 RRM2BQ7LG56 351 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF550Q7Z398 422 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 GRAMD2AQ8IUY3 354 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF440Q8IYI8 595 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 CLIP4Q8N3C7 705 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 GGHQ92820 318 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 Q96MT0 163 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 SPSB2Q99619 263 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF559Q9BR84 538 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 UBQLN4Q9NRR5 601 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 CLN6Q9NWW5 311 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 RHCGQ9UBD6 479 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 PPIEQ9UNP9 301 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 SLC35A3Q9Y2D2 325 aa16.79■□□□□ 0.28
CCDC88C-203ENST00000389856 CCDC187A0A096LP49 1063 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 PEX12O00623 359 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 OR10H3O60404 316 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 CSO75390 466 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 MT-CO3P00414 261 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 OSMP13725 252 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 UGT2B10P36537 528 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 NRG3P56975 720 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 SNRPGP62308 76 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 ALDH6A1Q02252 535 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 COX10Q12887 443 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms