RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CCL4P13236 92 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF19P17023 458 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 CRHR1P34998 444 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 CAV3P56539 151 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 CNN3Q15417 329 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 KRTCAP3Q53RY4 240 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF709Q8N972 641 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 OR7G1Q8NGA0 311 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF418Q8TF45 676 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 NPRL2Q8WTW4 380 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 COX4I2Q96KJ9 171 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 C3orf30Q96M34 536 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF582Q96NG8 517 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 MECRQ9BV79 373 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 C5AR2Q9P296 337 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 DHDHQ9UQ10 334 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 MED16Q9Y2X0 877 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 SUSD5O60279 629 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF780AO75290 641 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 C1orf105O95561 183 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 FAM153BP0C7A2 387 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 OR8G1Q15617 311 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF528Q3MIS6 628 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 PYDC2Q56P42 97 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 LEG1Q6P5S2 330 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 MFSD8Q8NHS3 518 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 TBC1D15Q8TC07 691 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 GNPDA2Q8TDQ7 276 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 CCDC120Q96HB5 630 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 FAM71F1Q96KD3 344 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 TSSK6Q9BXA6 273 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 TTTY10Q9BZA0 68 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 WDR55Q9H6Y2 383 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 RXFP3Q9NSD7 469 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 LHX3Q9UBR4 397 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 RAB21Q9UL25 225 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 KCNMB2Q9Y691 235 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 TMEM14AQ9Y6G1 99 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 KRBA1A5PL33 1030 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 TNFRSF1AP19438 455 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 CRHBPP24387 322 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 SERPINF1P36955 418 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 SRP9P49458 86 aaKnown RBP8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 SEC24CP53992 1094 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 CLPPQ16740 277 aaPredicted RBP8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 ARL13AQ5H913 290 aaPredicted RBP8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 ANKRD22Q5VYY1 191 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 CDH24Q86UP0 819 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 APLFQ8IW19 511 aaPredicted RBP8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF417Q8TAU3 575 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 ROBO4Q8WZ75 1007 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 RCN3Q96D15 328 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF587Q96SQ5 575 aaPredicted RBP8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 SHARPINQ9H0F6 387 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 POPDC3Q9HBV1 291 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 CUEDC1Q9NWM3 386 aaPredicted RBP8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 GNG12Q9UBI6 72 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 CARD8Q9Y2G2 431 aa8.59□□□□□ -1.04
LIMCH1-202ENST00000381753 TEX13DA0A0J9YY54 714 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 M0QX08 132 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 CDC14BO60729 498 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 ABHD2P08910 425 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 HIST1H1TP22492 207 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 IL2RGP31785 369 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 RGS6P49758 472 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 GDF10P55107 478 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 BST1Q10588 318 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 ACER2Q5QJU3 275 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 DCST2Q5T1A1 773 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 XKR5Q6UX68 686 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 SPRED1Q7Z699 444 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 MEX3DQ86XN8 651 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 GOLM1Q8NBJ4 401 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 JMJD8Q96S16 334 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 SLC12A9Q9BXP2 914 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 BARHL1Q9BZE3 327 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 OCIAD1Q9NX40 245 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 MYOTQ9UBF9 498 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 NPIPA5A0A0B4J1W7 369 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 MEIOCA2RUB1 952 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 NPIPA7E9PJI5 369 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 PENKP01210 267 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 NPIPA8P0DM63 369 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 RPS5P46782 204 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 HAS2Q92819 552 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 SCGB3A2Q96PL1 93 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 TPT1P8Q9HAU6 139 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 TNFRSF10DQ9UBN6 386 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 TCFL5Q9UL49 500 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 MYRFQ9Y2G1 1151 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 NPFFR2Q9Y5X5 522 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 AKAP11Q9UKA4 1901 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 EIF3FO00303 357 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 NXPH2O95156 264 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 PVALBP20472 110 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 EDDM3AQ14507 147 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 KLHL22Q53GT1 634 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 FRMPD2BQ6IN97 320 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 PIANPQ8IYJ0 282 aa8.58□□□□□ -1.04
LIMCH1-202ENST00000381753 OR5AS1Q8N127 324 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms