RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CHI3L1P36222 383 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PRPHP41219 470 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PLA2G16P53816 162 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 CXCL6P80162 114 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 BDH1Q02338 343 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ST3GAL3Q11203 375 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 EIF4EBP2Q13542 120 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 DPYSL3Q14195 570 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 KCNJ11Q14654 390 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 TEX44Q53QW1 395 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PYHIN1Q6K0P9 492 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ACSM5Q6NUN0 579 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 IFNEQ86WN2 208 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 TMEM17Q86X19 198 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 LRRC43Q8N309 656 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 DENND6BQ8NEG7 585 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 OR9A4Q8NGU2 314 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 CCDC26Q8TAB7 109 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 RAET1EQ8TD07 263 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 GTSF1Q8WW33 167 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 SPRYD4Q8WW59 207 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 TRUB1Q8WWH5 349 aaKnown RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ARNTL2Q8WYA1 636 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 MYLPFQ96A32 169 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 SLC30A2Q9BRI3 323 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 TSSK1BQ9BXA7 367 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ELOVL4Q9GZR5 314 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PDFQ9HBH1 243 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 EHFQ9NZC4 300 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 CYTH4Q9UIA0 394 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 OR10H1Q9Y4A9 318 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 E9PLD3 99 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 K7EQM0 130 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 GPAA1O43292 621 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TSC22D2O75157 780 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 DUSP14O95147 198 aaKnown RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 H2AFZP0C0S5 128 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 IQCF3P0C7M6 154 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 NT5EP21589 574 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 IGHV1-2P23083 117 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 NF2P35240 595 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 XCR1P46094 333 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 FNTAP49354 379 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SLC25A1P53007 311 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ARFIP1P53367 373 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ASAH1Q13510 395 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TGIF1Q15583 401 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 QRICH1Q2TAL8 776 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 DCST2Q5T1A1 773 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 UFSP1Q6NVU6 142 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 KCNIP4Q6PIL6 250 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ACOT1Q86TX2 421 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 C9orf40Q8IXQ3 194 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TBC1D21Q8IYX1 336 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SLC38A6Q8IZM9 456 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 OR2T3Q8NH03 318 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CTNNBL1Q8WYA6 563 aaPredicted RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TMEM80Q96HE8 168 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SENP8Q96LD8 212 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 OR5M11Q96RB7 305 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF607Q96SK3 696 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TXN2Q99757 166 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ZSCAN5AQ9BUG6 496 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ALG12Q9BV10 488 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 GLT8D2Q9H1C3 349 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ELOVL3Q9HB03 270 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 PNO1Q9NRX1 252 aaKnown RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 GNG12Q9UBI6 72 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 L3MBTL1Q9Y468 752 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CFAP65Q6ZU64 1925 aaKnown RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 IGHV3-35A0A0C4DH35 117 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 H3BMQ9 156 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 LATO43561 262 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SCRG1O75711 98 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ADCY5O95622 1261 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CA1P00915 261 aaPredicted RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CD55P08174 381 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TPSB2P20231 275 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 HNF1AP20823 631 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 FASP25445 335 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 GDF1P27539 372 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 HNMTP50135 292 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 RND3P61587 244 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CBX1P83916 185 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 VLDLRP98155 873 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TPSAB1Q15661 275 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SYPL1Q16563 259 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 TATDN3Q17R31 274 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SLC5A12Q1EHB4 618 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 GLYR1Q49A26 553 aaPredicted RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 GGTA1PQ4G0N0 100 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CCDC152Q4G0S7 254 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 PAN3Q58A45 887 aaKnown RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CFAP157Q5JU67 520 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 ATAD3BQ5T9A4 648 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 SLC22A10Q63ZE4 541 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 PVRIGQ6DKI7 326 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 CGB2Q6NT52 195 aa1.54□□□□□ -2.16
VPS13A-206ENST00000376646 APTXQ7Z2E3 356 aaKnown RBP1.54□□□□□ -2.16
VPS13A-206ENST00000376646 PPP1R42Q7Z4L9 355 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms