RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 C1QTNF2Q9BXJ5 285 aa19.68■□□□□ 0.74
UPF3A-202ENST00000375299 ZBP1Q9H171 429 aa19.68■□□□□ 0.74
UPF3A-202ENST00000375299 KLHL31Q9H511 634 aa19.68■□□□□ 0.74
UPF3A-202ENST00000375299 KRCC1Q9NPI7 259 aaPredicted RBP19.68■□□□□ 0.74
UPF3A-202ENST00000375299 FKBP7Q9Y680 259 aa19.68■□□□□ 0.74
UPF3A-202ENST00000375299 A0A1W2PR48 441 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 A0A1W2PS29 197 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 LRRN3E7EW58 273 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 CFDP00746 253 aaPredicted RBP19.67■□□□□ 0.74
UPF3A-202ENST00000375299 RAB3BP20337 219 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 BMP8BP34820 402 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 ZP1P60852 638 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 DPTQ07507 201 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 CRYZQ08257 329 aaKnown RBP19.67■□□□□ 0.74
UPF3A-202ENST00000375299 PRPF38BQ5VTL8 546 aaKnown RBP19.67■□□□□ 0.74
UPF3A-202ENST00000375299 BMP8AQ7Z5Y6 402 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 ADGRG3Q86Y34 549 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 OR56B4Q8NH76 319 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 HAVCR2Q8TDQ0 301 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 ZFP3Q96NJ6 502 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 TRMT61BQ9BVS5 477 aaKnown RBP19.67■□□□□ 0.74
UPF3A-202ENST00000375299 HCAR1Q9BXC0 346 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 LRRN3Q9H3W5 708 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 HCFC1R1Q9NWW0 138 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 SLC23A2Q9UGH3 650 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 SLC7A7Q9UM01 511 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.67■□□□□ 0.74
UPF3A-202ENST00000375299 MAB21L2Q9Y586 359 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 NPFFR2Q9Y5X5 522 aa19.67■□□□□ 0.74
UPF3A-202ENST00000375299 PRRC2BQ5JSZ5 2229 aaKnown RBP19.67■□□□□ 0.74
UPF3A-202ENST00000375299 ZIC2O95409 532 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-202ENST00000375299 STATHP02808 62 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 MT-ND4P03905 459 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 MC3RP41968 323 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 VSX2P58304 361 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-202ENST00000375299 TAS2R43P59537 309 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 RIPPLY1Q0D2K3 151 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 IQCF2Q8IXL9 164 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 TOR1AIP2Q8NFQ8 470 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 ACTR6Q9GZN1 396 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 LYARQ9NX58 379 aaKnown RBP19.66■□□□□ 0.74
UPF3A-202ENST00000375299 ZMIZ1Q9ULJ6 1067 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 ATG4BQ9Y4P1 393 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 UNC119BA6NIH7 251 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 CCL16O15467 120 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 HYAL3O43820 417 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-202ENST00000375299 REM1O75628 298 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 SDHBP21912 280 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 GRAMD2AQ8IUY3 354 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 C17orf47Q8NEP4 570 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 OR52L1Q8NGH7 329 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 OR51Q1Q8NH59 317 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 FANK1Q8TC84 345 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 ARRDC3Q96B67 414 aa19.66■□□□□ 0.74
UPF3A-202ENST00000375299 ZNF436Q9C0F3 470 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-202ENST00000375299 SPRTNQ9H040 489 aaPredicted RBP19.66■□□□□ 0.74
UPF3A-202ENST00000375299 MRPS7Q9Y2R9 242 aaKnown RBP19.66■□□□□ 0.74
UPF3A-202ENST00000375299 C4orf51C9J302 202 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 G3V3Q6 166 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 ANKRD34CP0C6C1 535 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 CSNK2A2P19784 350 aaPredicted RBP19.65■□□□□ 0.74
UPF3A-202ENST00000375299 PDX1P52945 283 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 KLF9Q13886 244 aaPredicted RBP19.65■□□□□ 0.74
UPF3A-202ENST00000375299 TMEM35AQ53FP2 167 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 SLC22A10Q63ZE4 541 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 GPAT4Q86UL3 456 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 OR2T35Q8NGX2 323 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 PGLYRP3Q96LB9 341 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 FCMRO60667 390 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 AIFM1O95831 613 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 WNT1P04628 370 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 LCN1P31025 176 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 FXYD6P3P58550 94 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 ACSM3Q53FZ2 586 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 MS4A15Q8N5U1 240 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 TEX19Q8NA77 164 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 LINC01555Q8NAE3 123 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 KREMEN2Q8NCW0 462 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 TCEAL4Q96EI5 215 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 C4orf36Q96KX1 117 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 ERMAPQ96PL5 475 aaPredicted RBP19.65■□□□□ 0.74
UPF3A-202ENST00000375299 DPH1Q9BZG8 443 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 CDCP1Q9H5V8 836 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 EMC3Q9P0I2 261 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 ABRACLQ9P1F3 81 aa19.65■□□□□ 0.74
UPF3A-202ENST00000375299 ZNF443Q9Y2A4 671 aaPredicted RBP19.65■□□□□ 0.74
UPF3A-202ENST00000375299 ABHD14A-ACY1A0A1B0GW23 586 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 TRABD2BA6NFA1 517 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 M0R233 179 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 BHLHE40O14503 412 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 BET1O15155 118 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 FGF18O76093 207 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 PRNPP04156 253 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 SNRPBP14678 240 aaKnown RBP19.64■□□□□ 0.74
UPF3A-202ENST00000375299 ACVR1BP36896 505 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 SNTB2Q13425 540 aaKnown RBP19.64■□□□□ 0.74
UPF3A-202ENST00000375299 DYRK1AQ13627 763 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 DEFB115Q30KQ5 88 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 TJAP1Q5JTD0 557 aa19.64■□□□□ 0.74
UPF3A-202ENST00000375299 MRM1Q6IN84 353 aaKnown RBP19.64■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms