RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SSTR2P30874 369 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 DRD3P35462 400 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 CCR6P51684 374 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 DUSP6Q16828 381 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 FAM209AQ5JX71 171 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 SLC25A30Q5SVS4 291 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 THSD4Q6ZMP0 1018 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 WDR88Q6ZMY6 472 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 TRMT10AQ8TBZ6 339 aaKnown RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 CHFRQ96EP1 664 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ABHD1Q96SE0 405 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ADAM29Q9UKF5 820 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 CDH10Q9Y6N8 788 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 MYO15AQ9UKN7 3530 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 UNC119BA6NIH7 251 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 SLC9B1P1A6NJY1 282 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 TNFRSF10AO00220 468 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 PROM1O43490 865 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 NFATC1O95644 943 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ZGLP1P0C6A0 271 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 FPR3P25089 353 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 GIFP27352 417 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 NAA10P41227 235 aaPredicted RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 FGL2Q14314 439 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 EXOSC7Q15024 291 aaKnown RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 TP53I3Q53FA7 332 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ADAMTSL4Q6UY14 1074 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 FRRS1Q6ZNA5 592 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 RFPL4BQ6ZWI9 263 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 MBOAT2Q6ZWT7 520 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ETFBKMTQ8IXQ9 262 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 LRRC17Q8N6Y2 441 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF485Q8NCK3 441 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 KIAA1143Q96AT1 154 aaPredicted RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ARHGDIGQ99819 225 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ORAI3Q9BRQ5 295 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 KCNN2Q9H2S1 579 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 PHPT1Q9NRX4 125 aaPredicted RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 NLGN3Q9NZ94 848 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ACSL5Q9ULC5 683 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 MGAT4AQ9UM21 535 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 NUP210Q8TEM1 1887 aaPredicted RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 ZSCAN5BA6NJL1 495 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 PRR23D1E9PI22 279 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 NOS1APO75052 506 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 HMGN1P05114 100 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 PRR23D2P0DMB1 279 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 ERGP11308 486 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 NT5EP21589 574 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 ATP12AP54707 1039 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TMEM35AQ53FP2 167 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 CD200R1LQ6Q8B3 271 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 SPPL3Q8TCT6 385 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF431Q8TF32 576 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 MKRN2Q9H000 416 aaKnown RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 SIDT1Q9NXL6 827 aaKnown RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3DA0A087WVF3 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3IA0A087WXS9 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3EA0A087X179 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3KA0A087X1G2 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3FA6NER0 549 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3LB9A6J9 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 PPP1R3DO95685 299 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 FGF19O95750 216 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 C1QBP02746 253 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3HP0C7X1 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 PEBP1P30086 187 aaKnown RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 MLC1Q15049 377 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 ARHGEF6Q15052 776 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 GXYLT1Q4G148 440 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 MRPL2Q5T653 305 aaKnown RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3GQ6DHY5 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3CQ6IPX1 549 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 LYPD4Q6UWN0 246 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 NRROSQ86YC3 692 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TBC1D3Q8IZP1 549 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TCTE3Q8IZS6 198 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 RFLNBQ8N5W9 214 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TTLQ8NG68 377 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 OR4D9Q8NGE8 314 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 HMGB4Q8WW32 186 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 RELTQ969Z4 430 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TOX2Q96NM4 488 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 GSDMCQ9BYG8 508 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 RBCK1Q9BYM8 510 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TRIM36Q9NQ86 728 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 MRPS18AQ9NVS2 196 aaKnown RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 KLHL21Q9UJP4 597 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 CNTRLQ7Z7A1 2325 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 EML2O95834 649 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 POU3F3P20264 500 aaPredicted RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 CMPK1P30085 196 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 GRPRP30550 384 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 ACSL1P33121 698 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 TRA2BP62995 288 aaKnown RBP11.28□□□□□ -0.6
CLIP3-201ENST00000360535 DECR1Q16698 335 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 C2orf27AQ580R0 203 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 SFXN4Q6P4A7 337 aa11.28□□□□□ -0.6
CLIP3-201ENST00000360535 MEPCEQ7L2J0 689 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms