RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RIF1Q5UIP0 2472 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 SLX4IPQ5VYV7 408 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ACSM5Q6NUN0 579 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 MED27Q6P2C8 311 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 TMIGD1Q6UXZ0 262 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SEM1Q6ZVN7 128 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 KCTD8Q6ZWB6 473 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 FAM122BQ7Z309 247 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 BCDIN3DQ7Z5W3 292 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 LRRTM4Q86VH4 590 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 CACUL1Q86Y37 369 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 GRAMD2AQ8IUY3 354 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ZDHHC21Q8IVQ6 265 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 GALNT4Q8N4A0 578 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ZNF321PQ8N8H1 164 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 TSPAN14Q8NG11 270 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 OR6T1Q8NGN1 323 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 NFKBIDQ8NI38 313 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 HAVCR2Q8TDQ0 301 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 LIPHQ8WWY8 451 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 DNASE2BQ8WZ79 361 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SMPDL3BQ92485 455 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 FAM3CQ92520 227 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 TFGQ92734 400 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 RPL3LQ92901 407 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 ADIPOR1Q96A54 375 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 NACC2Q96BF6 587 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ZNF514Q96K75 400 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 PRAP1Q96NZ9 151 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 MYCBPQ99417 103 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 SERPINI1Q99574 410 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 TREX2Q9BQ50 279 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 DPH7Q9BTV6 452 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 C9orf16Q9BUW7 83 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 EFCAB11Q9BUY7 163 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 XKR8Q9H6D3 395 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 GAREM1Q9H706 876 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 GID8Q9NWU2 228 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 MAT2BQ9NZL9 334 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 TAC3Q9UHF0 121 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 CD207Q9UJ71 328 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 DAPP1Q9UN19 280 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 DUSP12Q9UNI6 340 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 KLHL20Q9Y2M5 609 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 MN1Q10571 1320 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 A0A087WUU8 490 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 G3V2T6 193 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 G3V3Q6 166 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 IMPA2O14732 288 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ANGPT2O15123 496 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 NDUFS4O43181 175 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 DHHO43323 396 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 PRKYO43930 277 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 FGF17O60258 216 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 MRPS14O60783 128 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 KCNJ13O60928 360 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SLC43A1O75387 559 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 UGT2B17O75795 530 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 VIPP01282 170 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 HLA-DQB1P01920 261 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 CDK1P06493 297 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ANXA4P09525 319 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 ADORA3P0DMS8 318 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 PRG2P13727 222 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 FASP25445 335 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 APOBEC3AP31941 199 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 UGT2B10P36537 528 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SERPINF1P36955 418 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 OR1E2P47887 323 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 RGS4P49798 205 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SLC12A2P55011 1212 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 CTBP2P56545 445 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 RPP38P78345 283 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 MRPS21P82921 87 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 RHAGQ02094 409 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 LTBQ06643 244 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 RBBP4Q09028 425 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 MED21Q13503 144 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ART3Q13508 389 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 EFR3AQ14156 821 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ACOX1Q15067 660 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 PTGES3Q15185 160 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 TBC1D25Q3MII6 688 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 FAM98BQ52LJ0 330 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 NDUFAF5Q5TEU4 345 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 PAQR6Q6TCH4 344 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 KIAA1324Q6UXG2 1013 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 LINC00299Q6ZSB3 139 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SYT13Q7L8C5 426 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ARHGAP22Q7Z5H3 698 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 TMPRSS11BQ86T26 416 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SPATA24Q86W54 205 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 PLD3Q8IV08 490 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 TDHQ8IZJ6 230 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 CMTM4Q8IZR5 234 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SLC25A45Q8N413 288 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ACOT4Q8N9L9 421 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 LINC01356Q8N9X3 169 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms