RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CSNK2A1P68400 391 aaPredicted RBP13.93□□□□□ -0.18
COL17A1-201ENST00000353479 SMAD2Q15796 467 aaKnown RBP13.93□□□□□ -0.18
COL17A1-201ENST00000353479 IFI44Q8TCB0 444 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 TRPV4Q9HBA0 871 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 STUB1Q9UNE7 303 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 C12orf71A8MTZ7 269 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 METAP1P53582 386 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 GARNL3Q5VVW2 1013 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 INIPQ9NRY2 104 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 SLC23A2Q9UGH3 650 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 FBXO9Q9UK97 447 aaPredicted RBP13.93□□□□□ -0.18
COL17A1-201ENST00000353479 PADI1Q9ULC6 663 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 MEMO1Q9Y316 297 aa13.93□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF264O43296 627 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 PABPC4LP0CB38 370 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 FRKP42685 505 aaPredicted RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 THOC7Q6I9Y2 204 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 TM9SF4Q92544 642 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 HOXB13Q92826 284 aaPredicted RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 LGALS12Q96DT0 336 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 SAP130Q9H0E3 1048 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 METTL8Q9H825 291 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 GMPR2Q9P2T1 348 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 ICKQ9UPZ9 632 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 DLGAP1O14490 977 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 SLC19A2O60779 497 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 SLITRK5O94991 958 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 LIM2P55344 173 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 UNQ6126/PRO20091Q6UXV3 157 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 FTMTQ8N4E7 242 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 BOLLQ8N9W6 283 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 ZFPM2Q8WW38 1151 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 SPRYD4Q8WW59 207 aaPredicted RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 BORCS8Q96FH0 119 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 FUZQ9BT04 418 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 CFHR5Q9BXR6 569 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 OR52D1Q9H346 318 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF696Q9H7X3 374 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 SH3BGRL2Q9UJC5 107 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 NXT1Q9UKK6 140 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 A0A1B0GX78 115 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 LRIT2A6NDA9 550 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 LRRN3E7EW58 273 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 IGHEP01854 428 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 SSTR4P31391 388 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 SNU13P55769 128 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 CDK5R2Q13319 367 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 GK3PQ14409 553 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 TP53I3Q53FA7 332 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 DUSP19Q8WTR2 217 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 NANOS1Q8WY41 292 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 LRRN3Q9H3W5 708 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 STOML2Q9UJZ1 356 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 DNAJB5O75953 348 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 CD46P15529 392 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 PROX2Q3B8N5 592 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 TMEM201Q5SNT2 666 aa13.92□□□□□ -0.18
COL17A1-201ENST00000353479 TRUB1Q8WWH5 349 aaKnown RBP13.92□□□□□ -0.18
COL17A1-201ENST00000353479 G3V3Y1 287 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 GALR3O60755 368 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 CTNSO60931 367 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 F10P00742 488 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 RLN2P04090 185 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 SLC35E2P0CK97 266 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 TCN2P20062 427 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 BHLHA9Q7RTU4 235 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 PRSS48Q7RTY5 328 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ZFP90Q8TF47 636 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF707Q96C28 371 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 TWSG1Q9GZX9 223 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 MMP27Q9H306 513 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 AASSQ9UDR5 926 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 TESQ9UGI8 421 aaKnown RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 BOKQ9UMX3 212 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ERCC1P07992 297 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 CD79AP11912 226 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 CPOXP36551 454 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 SSR4P51571 173 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 RAB2AP61019 212 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 COX20Q5RI15 118 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 MANEAQ5SRI9 462 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 IRF2BPLQ9H1B7 796 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 PRDM9Q9NQV7 894 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF337Q9Y3M9 751 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 hCG_1807616A0A1W2PRN6 198 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF16P17020 682 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 GABRG2P18507 467 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 KEAP1Q14145 624 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 MOGQ16653 247 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF613Q6PF04 617 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 OR5AK2Q8NH90 309 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 KLHL15Q96M94 604 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ALG8Q9BVK2 526 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF701Q9NV72 531 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 C14orf166Q9Y224 244 aaKnown RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 TEX13CA0A0J9YWL9 993 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 TEX13DA0A0J9YY54 714 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 GYPBP06028 91 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 HERV-K104P61576 105 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 FAM71E1Q6IPT2 247 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms