RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 HSF2Q03933 536 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 GRK1Q15835 563 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 C9orf64Q5T6V5 341 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 PYHIN1Q6K0P9 492 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 CDC73Q6P1J9 531 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 BHLHB9Q6PI77 547 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 GDF7Q7Z4P5 450 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 ZNF527Q8NB42 609 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 OR2T35Q8NGX2 323 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 NXPE2Q96DL1 559 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 NUS1Q96E22 293 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 COQ10AQ96MF6 247 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 MCHR1Q99705 422 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 TSPAN11A1L157 253 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 HYAL3O43820 417 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-202ENST00000341753 ZIC2O95409 532 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-202ENST00000341753 H2AFB2P0C5Z0 115 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 MC3RP41968 323 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 ZP1P60852 638 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 RTL4Q6ZR62 310 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 ACOT11Q8WXI4 607 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-202ENST00000341753 GCDHQ92947 438 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-202ENST00000341753 CAMK1GQ96NX5 476 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 GSDMCQ9BYG8 508 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 OR51V1Q9H2C8 321 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 EPHX3Q9H6B9 360 aa20.83■□□□□ 0.93
TRIM28-202ENST00000341753 USP34Q70CQ2 3546 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 J3QLW9 94 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 J3QRE1 110 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 IFNA7P01567 189 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 WNT1P04628 370 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 ZGLP1P0C6A0 271 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 MYOGP15173 224 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 ZNF19P17023 458 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 STAT5AP42229 794 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 HTRA4P83105 476 aaPredicted RBP20.83■□□□□ 0.92
TRIM28-202ENST00000341753 TGM3Q08188 693 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 PUDPQ08623 228 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 C18orf63Q68DL7 685 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 OR2L2Q8NH16 312 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 SLC41A3Q96GZ6 507 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 ARHGDIGQ99819 225 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 DPH1Q9BZG8 443 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 METTL17Q9H7H0 456 aaPredicted RBP20.83■□□□□ 0.92
TRIM28-202ENST00000341753 PRKAG2Q9UGJ0 569 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 SLC7A7Q9UM01 511 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 ATG4BQ9Y4P1 393 aa20.83■□□□□ 0.92
TRIM28-202ENST00000341753 A0A0A6YYD5 115 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 MAGEB4O15481 346 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-202ENST00000341753 PAPLNO95428 1278 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 NFATC1O95644 943 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 NDUFV2P19404 249 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 TAGLNQ01995 201 aaKnown RBP20.82■□□□□ 0.92
TRIM28-202ENST00000341753 AGERQ15109 404 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 KANSL1Q7Z3B3 1105 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 DCUN1D3Q8IWE4 304 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 FTMTQ8N4E7 242 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 ABHD4Q8TB40 342 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 SPPL3Q8TCT6 385 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 XKR8Q9H6D3 395 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 AUNIPQ9H7T9 357 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 TRIM36Q9NQ86 728 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 OR6C2Q9NZP2 312 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 A0A1W2PRG6 482 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 ZNF593O00488 134 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-202ENST00000341753 MAN2B1O00754 1011 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 CLUP10909 449 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 REEP5Q00765 189 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 CAMK1Q14012 370 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 SUZ12Q15022 739 aaKnown RBP20.82■□□□□ 0.92
TRIM28-202ENST00000341753 SFRP4Q6FHJ7 346 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-202ENST00000341753 KCMF1Q9P0J7 381 aa20.82■□□□□ 0.92
TRIM28-202ENST00000341753 MEIKINA0A087WXM9 373 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 CISD3P0C7P0 127 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 LTB4RQ15722 352 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 CLLU1Q5K131 121 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 NIPAL3Q6P499 406 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 MS4A15Q8N5U1 240 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 OR9A2Q8NGT5 310 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 OR51Q1Q8NH59 317 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 THAP4Q8WY91 577 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 DPEP2Q9H4A9 486 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 C6orf106Q9H6K1 298 aaPredicted RBP20.81■□□□□ 0.92
TRIM28-202ENST00000341753 INSL6Q9Y581 213 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 EYSQ5T1H1 3165 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 A0A1W2PR48 441 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 C6P13671 934 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 PDX1P52945 283 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 GALEQ14376 348 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 ARRDC3Q96B67 414 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 C4orf36Q96KX1 117 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 SYNDIG1Q9H7V2 258 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 C12orf4Q9NQ89 552 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 RDH8Q9NYR8 311 aa20.81■□□□□ 0.92
TRIM28-202ENST00000341753 MRPS23Q9Y3D9 190 aaKnown RBP20.81■□□□□ 0.92
TRIM28-202ENST00000341753 SULT1A3P0DMM9 295 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 SULT1A4P0DMN0 295 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 ADH5P11766 374 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 F8A1P23610 371 aa20.8■□□□□ 0.92
TRIM28-202ENST00000341753 OR12D2P58182 307 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms