RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HRO43593 1189 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 SDC3O75056 442 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 RFPL3O75679 317 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 STAT5AP42229 794 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 RABIFP47224 123 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 EMDP50402 254 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 STX4Q12846 297 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 DUSP8Q13202 625 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF267Q14586 743 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 GXYLT1Q4G148 440 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 C3orf38Q5JPI3 329 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 AGAP7PQ5VUJ5 663 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 SAMD14Q8IZD0 417 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 VWA5B2Q8N398 1253 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 CDRT4Q8N9R6 151 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 OR10H4Q8NGA5 316 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 OR51L1Q8NGJ5 315 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 ANKRD9Q96BM1 317 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 DNAJA3Q96EY1 480 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 CD180Q99467 661 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 MAP3K3Q99759 626 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 TEX12Q9BXU0 123 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 LRRN3Q9H3W5 708 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 POT1Q9NUX5 634 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 TNFRSF10DQ9UBN6 386 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 CDH10Q9Y6N8 788 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 SLC30A4O14863 429 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 CPEP16870 476 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 BMP7P18075 431 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 ARFIP1P53367 373 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 FXYD6P3P58550 94 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 YPEL5P62699 121 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 SFSWAPQ12872 951 aaKnown RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 FHL5Q5TD97 284 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 GJD3Q8N144 294 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 POGLUT1Q8NBL1 392 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 ASB12Q8WXK4 309 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 SPACA7Q96KW9 195 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 KCTD7Q96MP8 289 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 PRRG3Q9BZD7 231 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 CBLCQ9ULV8 474 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 MAU2Q9Y6X3 613 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 SPTY2D1-AS1A0A0U1RR47 76 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 OR5K3A6NET4 321 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 CBX7O95931 251 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 DBIP07108 87 aaKnown RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 NID1P14543 1247 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MAOAP21397 527 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 PAICSP22234 425 aaKnown RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 NOS3P29474 1203 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 UBE2IP63279 158 aaKnown RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 CCINQ13939 588 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 AADACL4Q5VUY2 407 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 TUBA3EQ6PEY2 450 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 NRARPQ7Z6K4 114 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MARCH9Q86YJ5 346 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 SMRP1Q8NCR6 262 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 OR52L1Q8NGH7 329 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 RBM18Q96H35 190 aaKnown RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MSLNLQ96KJ4 702 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 INIPQ9NRY2 104 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 PCDH15Q96QU1 1955 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 CDHR4A6H8M9 788 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 C12orf71A8MTZ7 269 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 KDM4EB2RXH2 506 aaPredicted RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 TGFBR3LH3BV60 316 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MAGEB4O15481 346 aaPredicted RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 AGR2O95994 175 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 IFNA16P05015 189 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 PLAURQ03405 335 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 FAM53BQ14153 422 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 EIPR1Q53HC9 387 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 ARMC4Q5T2S8 1044 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MCATQ8IVS2 390 aaKnown RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 TMEM99Q8N816 258 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 BPIFA2Q96DR5 249 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 KLHDC7BQ96G42 594 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 CMAHPQ9Y471 501 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 A3GALT2U3KPV4 340 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 A8MV72 311 aaPredicted RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 TMCC2O75069 709 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 ATP1B1P05026 303 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MAGEA8P43361 318 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 TMED10P49755 219 aaKnown RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 DEFA1P59665 94 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 DEFA3P59666 94 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MGAT2Q10469 447 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 CCDC85BQ15834 202 aaPredicted RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 KIAA0895LQ68EN5 471 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 ABI3BPQ7Z7G0 1075 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 ZBTB8BQ8NAP8 495 aaPredicted RBP9.58□□□□□ -0.88
LIMA1-201ENST00000341247 MINDY2Q8NBR6 621 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 RFKQ969G6 155 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 LRRC61Q9BV99 259 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 KATNB1Q9BVA0 655 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 ZNF576Q9H609 170 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 LYRM4Q9HD34 91 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 SOHLH2Q9NX45 425 aa9.58□□□□□ -0.88
LIMA1-201ENST00000341247 A8MUA0 341 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms