RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 AMER2Q8N7J2 671 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 GATSQ8NAP1 163 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF527Q8NB42 609 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 IL4I1Q96RQ9 567 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 ADOQ96SZ5 270 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 PLA2G12AQ9BZM1 189 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 AMBNQ9NP70 447 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 UBQLN4Q9NRR5 601 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 WDR87Q6ZQQ6 2873 aa12.33□□□□□ -0.44
HMGB1-202ENST00000339872 A0A0B4J2E0 115 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 A0A1B0GX12 115 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 VSTM2BA6NLU5 285 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 OR6C76A6NM76 312 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 GALR2O43603 387 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-202ENST00000339872 MPZL2O60487 215 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 LYPD3O95274 346 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 UTS2O95399 124 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 ONECUT2O95948 504 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 FPR3P25089 353 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 EMP2P54851 167 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 CSNK2BP67870 215 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 TEKQ02763 1124 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 KLHL26Q53HC5 615 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 CADM2Q8N3J6 435 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 TEX47Q8TBZ9 253 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 TMEM239Q8WW34 195 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 PMEPA1Q969W9 287 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 SPSB2Q99619 263 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 CRB3Q9BUF7 120 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 HOXD1Q9GZZ0 328 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 AKIRIN1Q9H9L7 192 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-202ENST00000339872 CCNB1IP1Q9NPC3 277 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 A0A1B0GWA3 101 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 KPNA4O00629 521 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-202ENST00000339872 SCDO00767 359 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 RGS10O43665 173 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 REM1O75628 298 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 MT-ND2P03891 347 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 IL12BP29460 328 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 SLC5A2P31639 672 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 MC2RQ01718 297 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 PLCXD2Q0VAA5 305 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 GINS1Q14691 196 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 RASSF6Q6ZTQ3 369 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 PFN4Q8NHR9 129 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 IPCEF1Q8WWN9 437 aaPredicted RBP12.32□□□□□ -0.44
HMGB1-202ENST00000339872 SLC35B4Q969S0 331 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 NMD3Q96D46 503 aaKnown RBP12.32□□□□□ -0.44
HMGB1-202ENST00000339872 TRIM2Q9C040 744 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 SLC35A3Q9Y2D2 325 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 KIF26BQ2KJY2 2108 aa12.32□□□□□ -0.44
HMGB1-202ENST00000339872 SAGE2PA6NJ88 616 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CHP2O43745 196 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 JUNBP17275 347 aaPredicted RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 GPR143P51810 404 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CD226Q15762 336 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 ALG10BQ5I7T1 473 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 DESI1Q6ICB0 168 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CLVS1Q8IUQ0 354 aaPredicted RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 POGLUT1Q8NBL1 392 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 B3GNT7Q8NFL0 401 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 OR8D4Q8NGM9 314 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 PHOSPHO1Q8TCT1 267 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 COPS4Q9BT78 406 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 PLCXD1Q9NUJ7 323 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CLN6Q9NWW5 311 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 TVP23BQ9NYZ1 205 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 RSL24D1Q9UHA3 163 aaKnown RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 PSORS1C1Q9UIG5 152 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CDC42EP2O14613 210 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CDX4O14627 284 aaPredicted RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 KLF4O43474 513 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 ICOSLGO75144 302 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 FADS2O95864 444 aaKnown RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 UBL4AP11441 157 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 IFI30P13284 250 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 PCMT1P22061 227 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 TTKP33981 857 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 STAT5AP42229 794 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 GIPRP48546 466 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 SMSP52788 366 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 EMX1Q04741 257 aaPredicted RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 FAM199XQ6PEV8 388 aaPredicted RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 PAPD4Q6PIY7 484 aaKnown RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CCDC81Q6ZN84 652 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 HEATR5AQ86XA9 2040 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 NAXDQ8IW45 347 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 TCEANCQ8N8B7 351 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 LSMEM1Q8N8F7 131 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 TTC28Q96AY4 2481 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 TUBA1CQ9BQE3 449 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 DPH1Q9BZG8 443 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 ULBP3Q9BZM4 244 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 LHPPQ9H008 270 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 SLC26A1Q9H2B4 701 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 LIN28AQ9H9Z2 209 aaKnown RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 FBXO8Q9NRD0 319 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 C20orf141Q9NUB4 165 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 TBC1D23Q9NUY8 699 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 SLC39A1Q9NY26 324 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms