RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SNCBQ16143 134 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 GLYR1Q49A26 553 aaPredicted RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 POMZP3Q6PJE2 187 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 CBLN3Q6UW01 205 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 RNF130Q86XS8 419 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 FUNDC1Q8IVP5 155 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 MISPQ8IVT2 679 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 MBD3L2Q8NHZ7 208 aaPredicted RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 PHOSPHO1Q8TCT1 267 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 VPS33AQ96AX1 596 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 THOC1Q96FV9 657 aaKnown RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 HOXD1Q9GZZ0 328 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 CALHM2Q9HA72 323 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 KLHL14Q9P2G3 628 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 MKLN1Q9UL63 735 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 ITPR2Q14571 2701 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 FAM234BA2RU67 622 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 H0Y3Z8 333 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 H0YC42 278 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 HMGN4O00479 90 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 STX11O75558 287 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 UGT2B17O75795 530 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 PEPDP12955 493 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 MNAT1P51948 309 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 SUCLG1P53597 346 aaKnown RBP14.29□□□□□ -0.12
CLN3-201ENST00000333496 TPD52P55327 224 aaPredicted RBP14.29□□□□□ -0.12
CLN3-201ENST00000333496 RCAN2Q14206 197 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 SF3B4Q15427 424 aaKnown RBP eCLIP14.29□□□□□ -0.122e-7■■■■□ 24.8
CLN3-201ENST00000333496 GPR68Q15743 365 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 BCL2A1Q16548 175 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 PLPPR5Q32ZL2 321 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 TIGD2Q4W5G0 525 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 COX20Q5RI15 118 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 PDZK1Q5T2W1 519 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 AP1ARQ63HQ0 302 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 C16orf62Q7Z3J2 963 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 TRIML2Q8N7C3 387 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 C9orf106Q8NAJ2 232 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 ZNF527Q8NB42 609 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 ACBD4Q8NC06 268 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 B4GALNT2Q8NHY0 566 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 ZFP90Q8TF47 636 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 UCN2Q96RP3 112 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 PIGQQ9BRB3 760 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 NMUR2Q9GZQ4 415 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 NPHS2Q9NP85 383 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 KCNJ16Q9NPI9 418 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 EXD2Q9NVH0 621 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 DTNAQ9Y4J8 743 aa14.29□□□□□ -0.12
CLN3-201ENST00000333496 CLCA1A8K7I4 914 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 FAM47E-STBD1D6RA91 191 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 H3BML4 177 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 HNRNPRO43390 633 aaKnown RBP14.28□□□□□ -0.12
CLN3-201ENST00000333496 HCRTR2O43614 444 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 TNFRSF21O75509 655 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 AGR2O95994 175 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 CD1EP15812 388 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 PSMA4P25789 261 aaKnown RBP14.28□□□□□ -0.12
CLN3-201ENST00000333496 ZNF136P52737 540 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 MVDP53602 400 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 ZNF141Q15928 474 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 NDUFAF6Q330K2 333 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 GTDC1Q4AE62 458 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 TYW3Q6IPR3 259 aaKnown RBP14.28□□□□□ -0.12
CLN3-201ENST00000333496 DNAJC14Q6Y2X3 702 aaPredicted RBP14.28□□□□□ -0.12
CLN3-201ENST00000333496 MSANTD1Q6ZTZ1 278 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 UBQLNLQ8IYU4 475 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 RFWD2Q8NHY2 731 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 PNPT1Q8TCS8 783 aaKnown RBP14.28□□□□□ -0.12
CLN3-201ENST00000333496 MARVELD3Q96A59 401 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 ZNF524Q96C55 264 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 ROPN1LQ96C74 230 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 SAP130Q9H0E3 1048 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 ENKD1Q9H0I2 346 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 HHATLQ9HCP6 504 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 NPDC1Q9NQX5 325 aaPredicted RBP14.28□□□□□ -0.12
CLN3-201ENST00000333496 MED17Q9NVC6 651 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 CLCF1Q9UBD9 225 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 ICAM5Q9UMF0 924 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 CARD8Q9Y2G2 431 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 FBN2P35556 2912 aa14.28□□□□□ -0.12
CLN3-201ENST00000333496 HSPB2A8KAH6 182 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 LINC01387J3KSC0 135 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 IL2RAP01589 272 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 GUSBP08236 651 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 SNRPB2P08579 225 aaKnown RBP14.27□□□□□ -0.12
CLN3-201ENST00000333496 LINGO3P0C6S8 592 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 ZCCHC18P0CG32 403 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 POU3F2P20265 443 aaPredicted RBP14.27□□□□□ -0.12
CLN3-201ENST00000333496 KHKP50053 298 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 CLDN20P56880 219 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 STX1BP61266 288 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 HSPB2Q16082 182 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 MAPK14Q16539 360 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 FRRS1Q6ZNA5 592 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 ZNF614Q8N883 585 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 RELL2Q8NC24 303 aaPredicted RBP14.27□□□□□ -0.12
CLN3-201ENST00000333496 POC1BQ8TC44 478 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 C10orf82Q8WW14 230 aa14.27□□□□□ -0.12
CLN3-201ENST00000333496 GTF2H4Q92759 462 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms