RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PLD1Q13393 1074 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 FAM74A1Q5RGS3 127 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 TMEM88Q6PEY1 159 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF613Q6PF04 617 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 LINGO2Q7L985 606 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 HSD11B1LQ7Z5J1 315 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 TMCO2Q7Z6W1 182 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 C11orf96Q7Z7L8 435 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 OR52N1Q8NH53 320 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 SMPDL3AQ92484 453 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 WNT2BQ93097 391 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 ARSGQ96EG1 525 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 SAMD8Q96LT4 415 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 NPDC1Q9NQX5 325 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 MARK1Q9P0L2 795 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 LHX6Q9UPM6 363 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 FXYD6-FXYD2A0A087WZ82 144 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ANTXRLA6NF34 631 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 OR2W5A6NFC9 320 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 LINC00587B1AMM8 73 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 LRRN3E7EW58 273 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 PPM1DO15297 605 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 SELENOFO60613 162 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 NDUFS6O75380 124 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 CATP04040 527 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 HCCSP53701 268 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ERVK-25P63136 954 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 NDUFA9Q16795 377 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 C18orf63Q68DL7 685 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 KIAA1211LQ6NV74 962 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 APOOLQ6UXV4 268 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 RRM2BQ7LG56 351 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 TRMT11Q7Z4G4 463 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 RFKQ969G6 155 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 SLC38A3Q99624 504 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 SPATA5L1Q9BVQ7 753 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 FXYD6Q9H0Q3 95 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 LRRN3Q9H3W5 708 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 HRASLSQ9HDD0 168 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 MRTO4Q9UKD2 239 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 EXOGQ9Y2C4 368 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 BACE2Q9Y5Z0 518 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 AIPO00170 330 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 PLPP1O14494 284 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 UBL3O95164 117 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 C1GALT1C1LP0DN25 315 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 HLA-FP30511 346 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 RNF144AP50876 292 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 CCR9P51686 369 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 TMUB2Q71RG4 321 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 MEIOBQ8N635 442 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 RASGEF1AQ8N9B8 481 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 SORCS1Q8WY21 1168 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 SEMA4CQ9C0C4 833 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ELAC1Q9H777 363 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ERVK-19Q9WJR5 959 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 CA5BQ9Y2D0 317 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 TET1Q8NFU7 2136 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 OR6C75A6NL08 312 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 CDC42EP2O14613 210 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 CLUP10909 449 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 PSMB1P20618 241 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 OR12D2P58182 307 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF750Q32MQ0 723 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ACSM3Q53FZ2 586 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 VRK2Q86Y07 508 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 NRMQ8IXM6 262 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 PM20D2Q8IYS1 436 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ACBD7Q8N6N7 88 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 DCAF4L2Q8NA75 395 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 CHST14Q8NCH0 376 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 OR5M1Q8NGP8 315 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 OR52I2Q8NH67 350 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ZDHHC1Q8WTX9 485 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 PLD4Q96BZ4 506 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 PRRC1Q96M27 445 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 KLF16Q9BXK1 252 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 SUV39H2Q9H5I1 410 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 ESRP2Q9H6T0 727 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 EXOSC3Q9NQT5 275 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 PCDHGA5Q9Y5G8 931 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 IRAK3Q9Y616 596 aa12.53□□□□□ -0.4
CCDC88C-201ENST00000331194 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 DAPL1A0PJW8 107 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 LDOC1O95751 146 aaPredicted RBP12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 TBX6O95947 436 aaPredicted RBP12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 IGSF6O95976 241 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 RAB3BP20337 219 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 HTR1FP30939 366 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 S100A11P31949 105 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 MAGEB1P43366 347 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 OMPP47874 163 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 VEGFBP49765 207 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 ACSM1Q08AH1 577 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 TSPAN31Q12999 210 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 NOGQ13253 232 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 MRGPREQ86SM8 312 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 OR2AP1Q8NGE2 309 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 HAVCR2Q8TDQ0 301 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 GNPDA2Q8TDQ7 276 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms