RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CLECL1Q8IZS7 167 aa7.47□□□□□ -1.21
CIITA-201ENST00000324288 PLEKHJ1Q9NW61 149 aa7.47□□□□□ -1.21
CIITA-201ENST00000324288 RNGTTO60942 597 aaKnown RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 LBX2Q6XYB7 198 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 ZNF546Q86UE3 836 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 TMEM234Q8WY98 164 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 SMOQ99835 787 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 DPH7Q9BTV6 452 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 USP36Q9P275 1121 aaKnown RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 PRODH2Q9UF12 536 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 SLC10A3P09131 477 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 RPS25P62851 125 aaKnown RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 MFSD6LQ8IWD5 586 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 LRRC25Q8N386 305 aaPredicted RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 OR5W2Q8NH69 310 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 BRIX1Q8TDN6 353 aaKnown RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 FUBP3Q96I24 572 aaKnown RBP eCLIP7.46□□□□□ -1.21
CIITA-201ENST00000324288 NMNAT1Q9HAN9 279 aaPredicted RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 KLHL21Q9UJP4 597 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 FAM72CH0Y354 149 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 SERPINA5P05154 406 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 EBLN1P0CF75 366 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 FAM72AQ5TYM5 149 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 FAM72DQ6L9T8 149 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 KCTD18Q6PI47 426 aaPredicted RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 FAM72BQ86X60 149 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 OR52H1Q8NGJ2 320 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 NAA11Q9BSU3 229 aaPredicted RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 RBM24Q9BX46 236 aaKnown RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 TNCP24821 2201 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 NPIPA5A0A0B4J1W7 369 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 NPIPA7E9PJI5 369 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 SCGB2A1O75556 95 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 NPIPA8P0DM63 369 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 LMAN2Q12907 356 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 B3GNT8Q7Z7M8 397 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 BAGE3Q86Y29 109 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 BAGE2Q86Y30 109 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 ALDH16A1Q8IZ83 802 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 ZNF808Q8N4W9 903 aaPredicted RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 SENP5Q96HI0 755 aaPredicted RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 ACOT13Q9NPJ3 140 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 TMEM248Q9NWD8 314 aa7.46□□□□□ -1.21
CIITA-201ENST00000324288 MARCH4Q9P2E8 410 aaPredicted RBP7.46□□□□□ -1.21
CIITA-201ENST00000324288 OR6C76A6NM76 312 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 HSPB6O14558 160 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 DUX1O43812 170 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 MTNR1AP48039 350 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RAB28P51157 221 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 OPCMLQ14982 345 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 Q6ZPB1 254 aaPredicted RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 NECAP1Q8NC96 275 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 FAM213BQ8TBF2 198 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 LRRC46Q96FV0 321 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 HCAR1Q9BXC0 346 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 A0A1W2PQU0 124 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 AKAIN1P0CW23 69 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 ARSAP15289 507 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 TNFSF8P32971 234 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 XCR1P46094 333 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 HADHBP55084 474 aaKnown RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 SLC5A12Q1EHB4 618 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 SLCO2A1Q92959 643 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 FOXRED1Q96CU9 486 aaPredicted RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 SEC22AQ96IW7 307 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 NMNAT2Q9BZQ4 307 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 NIT2Q9NQR4 276 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 TNFRSF10AO00220 468 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 COCHO43405 550 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 ACRV1P26436 265 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 SPARTQ8N0X7 666 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 B3GNT7Q8NFL0 401 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 PXT1Q8NFP0 134 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 KCTD13Q8WZ19 329 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RPL3LQ92901 407 aaKnown RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 GLYATL1Q969I3 302 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 TPPP3Q9BW30 176 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 MED20Q9H944 212 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 CYTIPO60759 359 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 OR13C7P0DN81 318 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RAB6CQ53S08 254 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 BLOC1S3Q6QNY0 202 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 VASH1Q7L8A9 365 aaPredicted RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 UEVLDQ8IX04 471 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 OR52N2Q8NGI0 321 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 TCEAL7Q9BRU2 100 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RAB6CQ9H0N0 254 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 ZNF816-ZNF321PA0A0X1KG74 233 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 MTMR11A4FU01 709 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 FAM155AB1AL88 458 aaPredicted RBP7.46□□□□□ -1.22
CIITA-201ENST00000324288 ANKRD28O15084 1053 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 P2RX3P56373 397 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 RAB31Q13636 194 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 MICAQ29983 383 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 ZNF321PQ8N8H1 164 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 SLC30A7Q8NEW0 376 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 ANKK1Q8NFD2 765 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 IL1F10Q8WWZ1 152 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 ZNF382Q96SR6 550 aa7.46□□□□□ -1.22
CIITA-201ENST00000324288 PITHD1Q9GZP4 211 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms