RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C1orf94Q6P1W5 598 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 POMZP3Q6PJE2 187 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 TCEANCQ8N8B7 351 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 OR7G1Q8NGA0 311 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 OR8D4Q8NGM9 314 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 EDEM2Q9BV94 578 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 ENKD1Q9H0I2 346 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 WDR70Q9NW82 654 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 TRAPPC13A5PLN9 417 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 ZAR1LA6NP61 321 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 UTS2O95399 124 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 CCNA2P20248 432 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 OMPP47874 163 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 RBM48Q5RL73 367 aaKnown RBP15.17■□□□□ 0.02
USP4-201ENST00000265560 YOD1Q5VVQ6 348 aaPredicted RBP15.17■□□□□ 0.02
USP4-201ENST00000265560 SLC30A6Q6NXT4 461 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 PAPD4Q6PIY7 484 aaKnown RBP15.17■□□□□ 0.02
USP4-201ENST00000265560 BMP8AQ7Z5Y6 402 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 RHOXF1Q8NHV9 184 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 ACOT11Q8WXI4 607 aaPredicted RBP15.17■□□□□ 0.02
USP4-201ENST00000265560 DEPDC7Q96QD5 511 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 TAS2R16Q9NYV7 291 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 TRIM64A6NGJ6 449 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 SERINC4A6NH21 518 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 NPIPB9F8W1W9 429 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 FLRT2O43155 660 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 OXSR1O95747 527 aaPredicted RBP15.17■□□□□ 0.02
USP4-201ENST00000265560 FADS2O95864 444 aaKnown RBP15.17■□□□□ 0.02
USP4-201ENST00000265560 CELA2AP08217 269 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 ZNF773Q6PK81 442 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 KIRREL2Q6UWL6 708 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 MARCH3Q86UD3 253 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 OR14A16Q8NHC5 309 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 ZNF578Q96N58 590 aaPredicted RBP15.17■□□□□ 0.02
USP4-201ENST00000265560 NODALQ96S42 347 aa15.17■□□□□ 0.02
USP4-201ENST00000265560 INMTO95050 263 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 APOL3O95236 402 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 WISP1O95388 367 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 IFI30P13284 250 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 MAKP20794 623 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 RPS18P62269 152 aaKnown RBP15.16■□□□□ 0.02
USP4-201ENST00000265560 RAB39AQ14964 217 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 CNPY1Q3B7I2 92 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 BROXQ5VW32 411 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 SLC29A4Q7RTT9 530 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 APCDD1LQ8NCL9 501 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 PLPP5Q8NEB5 264 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 FBLIM1Q8WUP2 373 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 ENAMQ9NRM1 1142 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 PISDQ9UG56 409 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 EML6Q6ZMW3 1958 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 DCHS1Q96JQ0 3298 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 CPNE3O75131 537 aaKnown RBP15.16■□□□□ 0.02
USP4-201ENST00000265560 OR5F1O95221 314 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 NGFRP08138 427 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 ACP1P24666 158 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 ABCD3P28288 659 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 CDC42P60953 191 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 PLCXD2Q0VAA5 305 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 ILKQ13418 452 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 FGFBP1Q14512 234 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 GXYLT1Q4G148 440 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 ALG10BQ5I7T1 473 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 GPR107Q5VW38 600 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 XAF1Q6GPH4 301 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 DHRS13Q6UX07 377 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 HSDL2Q6YN16 418 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 DBX2Q6ZNG2 339 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 CLVS1Q8IUQ0 354 aaPredicted RBP15.16■□□□□ 0.02
USP4-201ENST00000265560 NAXDQ8IW45 347 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 PIGXQ8TBF5 258 aa15.16■□□□□ 0.02
USP4-201ENST00000265560 E9PQ18 207 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 TMX2-CTNND1H3BSU7 103 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 GALR2O43603 387 aaPredicted RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 TLX2O43763 284 aaPredicted RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 SCO2O43819 266 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 PRKYO43930 277 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 MT-ND2P03891 347 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 FGF5P12034 268 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 IL12BP29460 328 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 ALDH3B2P48448 385 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 GPR143P51810 404 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 ESRRGP62508 458 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 RNF4P78317 190 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 OR51A7Q8NH64 312 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 TGIF2Q9GZN2 237 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 ARMC7Q9H6L4 198 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 TMEM27Q9HBJ8 222 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 MEPEQ9NQ76 525 aaPredicted RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 IGLV3-12A0A075B6K2 115 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 GIPRP48546 466 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 EMX1Q04741 257 aaPredicted RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 ZNF141Q15928 474 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 TMEM239Q8WW34 195 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 OTULINQ96BN8 352 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 PSD2Q9BQI7 771 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 LHPPQ9H008 270 aa15.15■□□□□ 0.02
USP4-201ENST00000265560 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 PTRH2Q9Y3E5 179 aaKnown RBP15.15■□□□□ 0.02
USP4-201ENST00000265560 CEPT1Q9Y6K0 416 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms