RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PTPN6P29350 595 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SLC6A4P31645 630 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TGFBIQ15582 683 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 OR1C1Q15619 314 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ELAVL1Q15717 326 aaKnown RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 C9orf135Q5VTT2 229 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 FCRLBQ6BAA4 426 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 MRGPRGQ86SM5 289 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 RETREG3Q86VR2 466 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PTOV1Q86YD1 416 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF441Q8N8Z8 693 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ASCC1Q8N9N2 400 aaKnown RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 CNOT9Q92600 299 aaKnown RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 RAB1CQ92928 201 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SLC25A18Q9H1K4 315 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 MRPS7Q9Y2R9 242 aaKnown RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PRAMEF25A6NGN4 478 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 C12orf71A8MTZ7 269 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 GP1BAP07359 652 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 UNGP13051 313 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 RAB38P57729 211 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 NANOGP8Q6NSW7 305 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 MARVELD2Q8N4S9 558 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 C12orf45Q8N5I9 185 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 OR8K3Q8NH51 312 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PGM2Q96G03 612 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PCDHB18PQ96TA0 734 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 BHLHE41Q9C0J9 482 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TP63Q9H3D4 680 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SLC40A1Q9NP59 571 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 FAM120CQ9NX05 1096 aaKnown RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 B3GAT1Q9P2W7 334 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PCYT1BQ9Y5K3 369 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TMEM14AQ9Y6G1 99 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PIKFYVEQ9Y2I7 2098 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF878C9JN71 531 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PIP5K1CO60331 668 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 BCAS1O75363 584 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 LY86O95711 162 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 GPR75O95800 540 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ANGPTL1O95841 491 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 KITLGP21583 273 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PCGF2P35227 344 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 MMP12P39900 470 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 RGRP47804 291 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PRPS1P60891 318 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 HERV-K104P61576 105 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 CDKL1Q00532 357 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SCARB2Q14108 478 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 C6orf52Q5T4I8 152 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 STEAP3Q658P3 488 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 NUDT22Q9BRQ3 303 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SDHAF2Q9NX18 166 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TFR2Q9UP52 801 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 CNTN6Q9UQ52 1028 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 RPL36Q9Y3U8 105 aaKnown RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TNFRSF11BO00300 401 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ORC5O43913 435 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 GADD45GO95257 159 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TGM6O95932 706 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 CST1P01037 141 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 MAGEA6P43360 314 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 NXPH1P58417 271 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 BNIP2Q12982 314 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 OR5M10Q6IEU7 315 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TMEM107Q6UX40 140 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SCUBE1Q8IWY4 988 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 HOPXQ9BPY8 73 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PINK1Q9BXM7 581 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 BEX2Q9BXY8 128 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PLA2G2FQ9BZM2 168 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 FGF22Q9HCT0 170 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SPAG4Q9NPE6 437 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 MAGEL2Q9UJ55 1249 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SBF2Q86WG5 1849 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SLC5A10A0PJK1 596 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF487B1APH4 448 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 H0YAE9 185 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TMIGD3P0DMS9 266 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 HMGA1P17096 107 aaKnown RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 PRLHRP49683 370 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 OR7A5Q15622 319 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ISXQ2M1V0 245 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 CYP2R1Q6VVX0 501 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ARHGAP36Q6ZRI8 547 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 DEFB107AQ8IZN7 70 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 C8orf59Q8N0T1 100 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-218ENST00000640036 NUP37Q8NFH4 326 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 OR5AK3PQ8NH89 298 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 FNDC8Q8TC99 324 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 TCEAL7Q9BRU2 100 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 KIR3DX1Q9H7L2 352 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 NINJ2Q9NZG7 142 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF222Q9UK12 451 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 KCNS2Q9ULS6 477 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 RNF24Q9Y225 148 aa4.71□□□□□ -1.66
SCN1A-218ENST00000640036 SLC19A2O60779 497 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 SLCO2B1O94956 709 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 IDUAP35475 653 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms