RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FOXA1P55317 472 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 CARD18P57730 90 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 HSPB3Q12988 150 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 PLPPR5Q32ZL2 321 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 GLE1Q53GS7 698 aaKnown RBP17.28■□□□□ 0.36
CLN3-262ENST00000637699 PDSS1Q5T2R2 415 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 FIGNL1Q6PIW4 674 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 NUFIP2Q7Z417 695 aaKnown RBP17.28■□□□□ 0.36
CLN3-262ENST00000637699 ATG4DQ86TL0 474 aaPredicted RBP17.28■□□□□ 0.36
CLN3-262ENST00000637699 HIPK1Q86Z02 1210 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 ABHD3Q8WU67 409 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 FMO2Q99518 471 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 KLHDC3Q9BQ90 382 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 MID1IP1Q9NPA3 183 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 NGBQ9NPG2 151 aa17.28■□□□□ 0.36
CLN3-262ENST00000637699 A0A1W2PP18 115 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 SERTM1A2A2V5 107 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 C7orf72A4D263 438 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 TTC36A6NLP5 189 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 KIF2AO00139 706 aaPredicted RBP17.27■□□□□ 0.36
CLN3-262ENST00000637699 CD5LO43866 347 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 NDUFS7O75251 213 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 GCM2O75603 506 aaPredicted RBP17.27■□□□□ 0.36
CLN3-262ENST00000637699 IGHV4-39P01824 125 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 PRPS2P11908 318 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 GPC1P35052 558 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 SFTPDP35247 375 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 SLC29A2Q14542 456 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 TAB1Q15750 504 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 TMEM201Q5SNT2 666 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 SLC22A9Q8IVM8 553 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 LILRA2Q8N149 483 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 GABRG1Q8N1C3 465 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 KIF18AQ8NI77 898 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 FBXO30Q8TB52 745 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 POC1BQ8TC44 478 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 ZBED6CLQ96FA7 236 aaPredicted RBP17.27■□□□□ 0.36
CLN3-262ENST00000637699 REXO5Q96IC2 774 aaKnown RBP17.27■□□□□ 0.36
CLN3-262ENST00000637699 KLHL15Q96M94 604 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 TSPYL1Q9H0U9 437 aa17.27■□□□□ 0.36
CLN3-262ENST00000637699 UBFD1O14562 309 aaKnown RBP17.26■□□□□ 0.35
CLN3-262ENST00000637699 ADAM11O75078 769 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 NKX2-2O95096 273 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 PABPC4LP0CB38 370 aaKnown RBP17.26■□□□□ 0.35
CLN3-262ENST00000637699 ADH6P28332 368 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 SHC1P29353 583 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 ZNF672Q499Z4 452 aaPredicted RBP17.26■□□□□ 0.35
CLN3-262ENST00000637699 VPS26BQ4G0F5 336 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 SFRP5Q5T4F7 317 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 ANKRD26P1Q6NSI1 321 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 NOXRED1Q6NXP6 359 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 TFAP2EQ6VUC0 442 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 SZRD1Q7Z422 152 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 ZAR1Q86SH2 424 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 TUSC5Q8IXB3 177 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 CCNYL1Q8N7R7 359 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 KBTBD8Q8NFY9 601 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 ACTRT2Q8TDY3 377 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 HSD17B8Q92506 261 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 L3HYPDHQ96EM0 354 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 EGLN2Q96KS0 407 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 GSTO2Q9H4Y5 243 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 HHATLQ9HCP6 504 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 GDF2Q9UK05 429 aaPredicted RBP17.26■□□□□ 0.35
CLN3-262ENST00000637699 SNX8Q9Y5X2 465 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 FREM1Q5H8C1 2179 aa17.26■□□□□ 0.35
CLN3-262ENST00000637699 CADP27708 2225 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 A0A087WUV0 522 aaPredicted RBP17.25■□□□□ 0.35
CLN3-262ENST00000637699 ADAP00813 363 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 NGFRP08138 427 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 HPGDP15428 266 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 MAP3K8P41279 467 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 BSPH1Q075Z2 132 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 ZNF239Q16600 458 aaKnown RBP17.25■□□□□ 0.35
CLN3-262ENST00000637699 PGGHGQ32M88 737 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 TRABD2AQ86V40 505 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 FAM76AQ8TAV0 307 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 RNF128Q8TEB7 428 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 CIDECQ96AQ7 238 aaPredicted RBP17.25■□□□□ 0.35
CLN3-262ENST00000637699 HS6ST2Q96MM7 605 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 SRXN1Q9BYN0 137 aa17.25■□□□□ 0.35
CLN3-262ENST00000637699 WBP11Q9Y2W2 641 aaKnown RBP17.25■□□□□ 0.35
CLN3-262ENST00000637699 EXOC1LA0A1B0GW35 172 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 PDPK1O15530 556 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 KCNK2O95069 426 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 IFI6P09912 130 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 ACP2P11117 423 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 RNPS1Q15287 305 aaKnown RBP17.24■□□□□ 0.35
CLN3-262ENST00000637699 CHRFAM7AQ494W8 412 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 TIFABQ6ZNK6 161 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 IKBIPQ70UQ0 350 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 BANPQ8N9N5 519 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 CDRT4Q8N9R6 151 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 SLC16A11Q8NCK7 471 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 NUP43Q8NFH3 380 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 CEP70Q8NHQ1 597 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 B4GALNT2Q8NHY0 566 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 PIWIL2Q8TC59 973 aaKnown RBP17.24■□□□□ 0.35
CLN3-262ENST00000637699 TMEM158Q8WZ71 300 aa17.24■□□□□ 0.35
CLN3-262ENST00000637699 HOXB13Q92826 284 aaPredicted RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms