RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 NDUFB5O43674 189 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 GMFGO60234 142 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 ANGPTL1O95841 491 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 NGFRP08138 427 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 NR2F1P10589 423 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 ETFAP13804 333 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 TBXA2RP21731 343 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 PPIBP23284 216 aaKnown RBP16.2■□□□□ 0.18
CLN3-247ENST00000636351 RNF144AP50876 292 aaPredicted RBP16.2■□□□□ 0.18
CLN3-247ENST00000636351 GAS1P54826 345 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 DSTNP60981 165 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 GPR68Q15743 365 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 LRIF1Q5T3J3 769 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 FNDC7Q5VTL7 733 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 OLIG3Q7RTU3 272 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 SNX32Q86XE0 403 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 PLCZ1Q86YW0 608 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 MARVELD2Q8N4S9 558 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 TREX2Q9BQ50 279 aaPredicted RBP16.2■□□□□ 0.18
CLN3-247ENST00000636351 ZNF350Q9GZX5 532 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 HOXD1Q9GZZ0 328 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 SLC6A15Q9H2J7 730 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 QPCTLQ9NXS2 382 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 FAM53CQ9NYF3 392 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 SLC25A37Q9NYZ2 338 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 SLAMF8Q9P0V8 285 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 P2RX2Q9UBL9 471 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 WDR45Q9Y484 360 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 HRH3Q9Y5N1 445 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 CACNA1CQ13936 2221 aa16.2■□□□□ 0.18
CLN3-247ENST00000636351 TMEM247A6NEH6 219 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 C17orf51A8MQB3 221 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 ALG1L2C9J202 215 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 H3BNH8 94 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 SLC22A2O15244 555 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 HOXB9P17482 250 aaPredicted RBP16.19■□□□□ 0.18
CLN3-247ENST00000636351 TCEA1P23193 301 aaKnown RBP16.19■□□□□ 0.18
CLN3-247ENST00000636351 ADSLP30566 484 aaPredicted RBP16.19■□□□□ 0.18
CLN3-247ENST00000636351 MAGEA8P43361 318 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 ATP12AP54707 1039 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 FUT5Q11128 374 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 CYLC2Q14093 348 aaPredicted RBP16.19■□□□□ 0.18
CLN3-247ENST00000636351 REP15Q6BDI9 236 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 HEPHL1Q6MZM0 1159 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 ARHGAP11AQ6P4F7 1023 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 APOOLQ6UXV4 268 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 MTDHQ86UE4 582 aaKnown RBP16.19■□□□□ 0.18
CLN3-247ENST00000636351 RETREG3Q86VR2 466 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 MSRB3Q8IXL7 192 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 WDSUB1Q8N9V3 476 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 RTN4RQ9BZR6 473 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 VAPAQ9P0L0 249 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 FBXL2Q9UKC9 423 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 MKLN1Q9UL63 735 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 LIPT1Q9Y234 373 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 ZNF407Q9C0G0 2248 aa16.19■□□□□ 0.18
CLN3-247ENST00000636351 DNAJC13O75165 2243 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 SETD2Q9BYW2 2564 aaPredicted RBP16.18■□□□□ 0.18
CLN3-247ENST00000636351 TRGV5A0A0B4J1U4 118 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 BBIP1A8MTZ0 92 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 EVPLLA8MZ36 301 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 MRASO14807 208 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 KIAA0513O60268 411 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 CBR3O75828 277 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 H6PDO95479 791 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 C17orf67Q0P5P2 114 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 FADDQ13158 208 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 SYPL1Q16563 259 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 TRILQ7L0X0 811 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 ZNF619Q8N2I2 560 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 DPP10Q8N608 796 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 ANKFN1Q8N957 763 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 OR14L1PQ8NHC6 308 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 PHOSPHO1Q8TCT1 267 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 DUSP19Q8WTR2 217 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 NTNG2Q96CW9 530 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 SH3YL1Q96HL8 342 aaPredicted RBP16.18■□□□□ 0.18
CLN3-247ENST00000636351 TRNT1Q96Q11 434 aaKnown RBP16.18■□□□□ 0.18
CLN3-247ENST00000636351 DSN1Q9H410 356 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 HHATLQ9HCP6 504 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 POLE3Q9NRF9 147 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 MED11Q9P086 117 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 CORO2BQ9UQ03 480 aa16.18■□□□□ 0.18
CLN3-247ENST00000636351 C15orf38-AP3S2A0A0A6YYH1 394 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 LOC100653049A0A140TA62 436 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 FAM90A27PA6NNH2 459 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 FCMRO60667 390 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 HCN1O60741 890 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 TNFRSF21O75509 655 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 KRT34O76011 436 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 IGHG3P01860 377 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 BCHEP06276 602 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 CHRM4P08173 479 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 GCKP35557 465 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 MVDP53602 400 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 CAPRIN1Q14444 709 aaKnown RBP16.17■□□□□ 0.18
CLN3-247ENST00000636351 RGNQ15493 299 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 TRMT5Q32P41 509 aaKnown RBP16.17■□□□□ 0.18
CLN3-247ENST00000636351 PDZK1Q5T2W1 519 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 GCNT6Q5T4J0 391 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms