RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RP9Q8TA86 221 aaKnown RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 PHOSPHO1Q8TCT1 267 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 SH3YL1Q96HL8 342 aaPredicted RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 CCT8L2Q96SF2 557 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 CPPED1Q9BRF8 314 aaPredicted RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 THUMPD3Q9BV44 507 aaKnown RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 RTN4RQ9BZR6 473 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 UBQLN3Q9H347 655 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 PTGES2Q9H7Z7 377 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 CACYBPQ9HB71 228 aaKnown RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 CALML5Q9NZT1 146 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 MED11Q9P086 117 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 DTNAQ9Y4J8 743 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 HRH3Q9Y5N1 445 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 MYO7BQ6PIF6 2116 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 C15orf38-AP3S2A0A0A6YYH1 394 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 C5orf58C9J3I9 102 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 FAM47E-STBD1D6RA91 191 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 GTPBP1O00178 669 aaKnown RBP16.45■□□□□ 0.22
CLN3-239ENST00000628023 HCRTR2O43614 444 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 HCN1O60741 890 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 SLC19A2O60779 497 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 SHOX2O60902 331 aaPredicted RBP16.45■□□□□ 0.22
CLN3-239ENST00000628023 TNFRSF21O75509 655 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 IGHG3P01860 377 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 HPNP05981 417 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 CHRM4P08173 479 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 PTGS2P35354 604 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 CRISP3P54108 245 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 MTPNP58546 118 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 CHRNEQ04844 493 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 ZNF630Q2M218 657 aaPredicted RBP16.45■□□□□ 0.22
CLN3-239ENST00000628023 GKAP1Q5VSY0 366 aaPredicted RBP16.45■□□□□ 0.22
CLN3-239ENST00000628023 FRRS1Q6ZNA5 592 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 LRRC74BQ6ZQY2 392 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 YRDCQ86U90 279 aaKnown RBP16.45■□□□□ 0.22
CLN3-239ENST00000628023 TMCO5AQ8N6Q1 288 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 FAM83FQ8NEG4 500 aaPredicted RBP16.45■□□□□ 0.22
CLN3-239ENST00000628023 OR2M3Q8NG83 312 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 ANKRD27Q96NW4 1050 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 CCDC106Q9BWC9 280 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 ACKR4Q9NPB9 350 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 GID8Q9NWU2 228 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 SH3BGRL2Q9UJC5 107 aa16.45■□□□□ 0.22
CLN3-239ENST00000628023 TRGV8A0A0C4DH27 118 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 PRAMEF27A3QJZ7 478 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 PRSS44E7EML9 344 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 NPIPB9F8W1W9 429 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 AQP7O14520 342 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 ZNHIT1O43257 154 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 SUSD5O60279 629 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 UGT2B17O75795 530 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 DCTN3O75935 186 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 FAM107AO95990 144 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 GUSBP08236 651 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 NUDT7P0C024 238 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 COX4I1P13073 169 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 DPP4P27487 766 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 SRD5A2P31213 254 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 DSCR4P56555 118 aaPredicted RBP16.44■□□□□ 0.22
CLN3-239ENST00000628023 GANABQ14697 944 aaKnown RBP16.44■□□□□ 0.22
CLN3-239ENST00000628023 CD226Q15762 336 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 ZNF141Q15928 474 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 CYP51A1Q16850 503 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 KLHL26Q53HC5 615 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 EIPR1Q53HC9 387 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 RUNDC3AQ59EK9 446 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 WIPI1Q5MNZ9 446 aaPredicted RBP16.44■□□□□ 0.22
CLN3-239ENST00000628023 SP5Q6BEB4 398 aaPredicted RBP16.44■□□□□ 0.22
CLN3-239ENST00000628023 MTERF4Q7Z6M4 381 aaKnown RBP16.44■□□□□ 0.22
CLN3-239ENST00000628023 HMGN2P46Q86SG4 172 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 FADS6Q8N9I5 356 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 SLC38A5Q8WUX1 472 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 MAL2Q969L2 176 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 MARVELD3Q96A59 401 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 RCN3Q96D15 328 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 TRIM8Q9BZR9 551 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 MYLK2Q9H1R3 596 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 IKZF5Q9H5V7 419 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 A4GALTQ9NPC4 353 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 PLSCR2Q9NRY7 297 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 TAS2R10Q9NYW0 307 aa16.44■□□□□ 0.22
CLN3-239ENST00000628023 ZNF407Q9C0G0 2248 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 CENPVL1A0A0U1RR11 272 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 SERINC4A6NH21 518 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 NPIPA2E9PIF3 369 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 NPIPA3F8WFD2 350 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 PRRG2O14669 202 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 ADAM10O14672 748 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 NUDT14O95848 222 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 TPOP07202 933 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 UBL4AP11441 157 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 ENDOUP21128 410 aaKnown RBP16.43■□□□□ 0.22
CLN3-239ENST00000628023 MSX1P28360 303 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 CCR4P51679 360 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 IFNEQ86WN2 208 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 TREML1Q86YW5 311 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 B4GALNT2Q8NHY0 566 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 NEIL3Q8TAT5 605 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 OIT3Q8WWZ8 545 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms