RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PSMB1P20618 241 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 SEC61A1P61619 476 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 POLR2GP62487 172 aaKnown RBP eCLIP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 DGCR2P98153 550 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 HTR4Q13639 388 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MRPL58Q14197 206 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 FAM71E1Q6IPT2 247 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MED27Q6P2C8 311 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 RSPO2Q6UXX9 243 aaPredicted RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 LINGO4Q6UY18 593 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 CXXC5Q7LFL8 322 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 COMMD6Q7Z4G1 85 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 TMEM17Q86X19 198 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 KLHDC8AQ8IYD2 350 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 CPXM2Q8N436 756 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MEIOBQ8N635 442 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 OR5M9Q8NGP3 310 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 HAVCR2Q8TDQ0 301 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 SMIM4Q8WVI0 70 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 CNOT9Q92600 299 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MRPS24Q96EL2 167 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 ZFP3Q96NJ6 502 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 OR2A7Q96R45 310 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 NKX6-2Q9C056 277 aaPredicted RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 TRIM36Q9NQ86 728 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 TEX10Q9NXF1 929 aaPredicted RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 KLF15Q9UIH9 416 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 ICKQ9UPZ9 632 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MID1O15344 667 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 ZNF254O75437 659 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 RASGRP1O95267 797 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 CD160O95971 181 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 DRD5P21918 477 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MAPK3P27361 379 aaPredicted RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 HTR1FP30939 366 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MAPK8P45983 427 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 RPS13P62277 151 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 CNTN1Q12860 1018 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 PIN1Q13526 163 aaPredicted RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 CCDC157Q569K6 752 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 AADACL4Q5VUY2 407 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 SLC8B1Q6J4K2 584 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 GSG1LQ6UXU4 331 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 FAM83HQ6ZRV2 1179 aaPredicted RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 RAB11FIP2Q7L804 512 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 MORN4Q8NDC4 146 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 OR4F15Q8NGB8 312 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 GNPDA2Q8TDQ7 276 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 C16orf78Q8WTQ4 265 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 ZDHHC1Q8WTX9 485 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 GUCD1Q96NT3 240 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 SMG9Q9H0W8 520 aaKnown RBP10.12□□□□□ -0.79
UPF3A-212ENST00000619079 SLC25A32Q9H2D1 315 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 EVA1AQ9H8M9 152 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 BIN3Q9NQY0 253 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 BABAM2Q9NXR7 383 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 COA4Q9NYJ1 87 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 PIPOXQ9P0Z9 390 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 ABRACLQ9P1F3 81 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 GPR160Q9UJ42 338 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 CHST2Q9Y4C5 530 aa10.12□□□□□ -0.79
UPF3A-212ENST00000619079 IGLV3-16A0A075B6K0 115 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 A0A1B0GVC2 190 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 A6NIN4 97 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 POM121CA8CG34 1229 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SNRPGP15A8MWD9 76 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 FOXE1O00358 373 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 TGM5O43548 720 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 CREBL2O60519 120 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 LILRB3O75022 631 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SH3BGRLO75368 114 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SC5DO75845 299 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 KDM4BO94953 1096 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 CBX7O95931 251 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 WNT1P04628 370 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 ATP5A1P25705 553 aaKnown RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 MEOX2P50222 304 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 CCR9P51686 369 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 PSMA6P60900 246 aaKnown RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 DEFA5Q01523 94 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 KRT33BQ14525 404 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 UBXN2BQ14CS0 331 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SLC30A6Q6NXT4 461 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 ATRAIDQ6UW56 229 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 TMUB2Q71RG4 321 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 CDH26Q8IXH8 852 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 GJD3Q8N144 294 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 EID2Q8N6I1 236 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 OR11G2Q8NGC1 345 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SORCS1Q8WY21 1168 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 NR4A3Q92570 626 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 MRPS31Q92665 395 aaKnown RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 PRRC1Q96M27 445 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 ZNF649Q9BS31 505 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 TMEM121BQ9BXQ6 578 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 PLA2G12AQ9BZM1 189 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 EGLN3Q9H6Z9 239 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 MIEF1Q9NQG6 463 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 NKIRAS2Q9NYR9 191 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 H2AFY2Q9P0M6 372 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms