RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ZFP90Q8TF47 636 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 ASB5Q8WWX0 329 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 ROPN1LQ96C74 230 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 SH3YL1Q96HL8 342 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-215ENST00000601150 ZNF350Q9GZX5 532 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 POLE3Q9NRF9 147 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 SLC6A13Q9NSD5 602 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 CCDC167Q9P0B6 97 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 RNF6Q9Y252 685 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 WDR45Q9Y484 360 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 DTNAQ9Y4J8 743 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 KLF2Q9Y5W3 355 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-215ENST00000601150 CACNA1CQ13936 2221 aa15.27■□□□□ 0.03
TRIM28-215ENST00000601150 A0A087WZY1 265 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 HMGN4O00479 90 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 NR5A2O00482 541 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 FCMRO60667 390 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 EPPINO95925 133 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 VIMP08670 466 aaKnown RBP15.26■□□□□ 0.03
TRIM28-215ENST00000601150 NCF2P19878 526 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-215ENST00000601150 CHRNB4P30926 498 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 LHX2P50458 406 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 GUCY1A3Q02108 690 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 FUT5Q11128 374 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 GPR68Q15743 365 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF141Q15928 474 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 BCL2A1Q16548 175 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 AGKQ53H12 422 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 SLC2A7Q6PXP3 512 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 LACC1Q8IV20 430 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF614Q8N883 585 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 OR10Q1Q8NGQ4 319 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 B4GALNT2Q8NHY0 566 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 PNPT1Q8TCS8 783 aaKnown RBP15.26■□□□□ 0.03
TRIM28-215ENST00000601150 CA5BP1Q8WTZ4 195 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 GTF2H4Q92759 462 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 SPDL1Q96EA4 605 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 PIGQQ9BRB3 760 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 RABEP2Q9H5N1 569 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 CCDC134Q9H6E4 229 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 FGFR1OP2Q9NVK5 253 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 MKLN1Q9UL63 735 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 LIPT1Q9Y234 373 aa15.26■□□□□ 0.03
TRIM28-215ENST00000601150 A0A096LPI6 279 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 OR2M5A3KFT3 312 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 PRSS44E7EML9 344 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 H0Y3Z8 333 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 LINC01387J3KSC0 135 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 GTPBP1O00178 669 aaKnown RBP15.25■□□□□ 0.03
TRIM28-215ENST00000601150 HCRTR2O43614 444 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 KIAA0513O60268 411 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 STARP49675 285 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF41P51814 821 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-215ENST00000601150 HPCAP84074 193 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF117Q03924 483 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 SRYQ05066 204 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 CDSNQ15517 529 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 TMEM44Q2T9K0 475 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 GPAT3Q53EU6 434 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 COX20Q5RI15 118 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 PDZK1Q5T2W1 519 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 RIPPLY2Q5TAB7 128 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 METTL21CQ5VZV1 264 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 AP1ARQ63HQ0 302 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 HIST2H2BCQ6DN03 193 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 ARSKQ6UWY0 536 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 OLIG3Q7RTU3 272 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 CCDC71Q8IV32 467 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-215ENST00000601150 ZPLD1Q8TCW7 415 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 OIT3Q8WWZ8 545 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 TMEM120AQ9BXJ8 343 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 PAIP1Q9H074 479 aaKnown RBP15.25■□□□□ 0.03
TRIM28-215ENST00000601150 SAP130Q9H0E3 1048 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF385DQ9H6B1 395 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 TPT1P8Q9HAU6 139 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 VDAC3Q9Y277 283 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 KIAA1549Q9HCM3 1950 aa15.25■□□□□ 0.03
TRIM28-215ENST00000601150 PRAMEF27A3QJZ7 478 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 SERINC4A6NH21 518 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 CD8B2A6NJW9 211 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 TNFRSF21O75509 655 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 UGT2B17O75795 530 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 PEPDP12955 493 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF708P17019 499 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF17P17021 662 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 POU3F2P20265 443 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-215ENST00000601150 COL8A1P27658 744 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 HTR1EP28566 365 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 MDH1P40925 334 aaKnown RBP15.24■□□□□ 0.03
TRIM28-215ENST00000601150 RNF144AP50876 292 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-215ENST00000601150 P2RX1P51575 399 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 SUMO3P55854 103 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-215ENST00000601150 CLDN18P56856 261 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 GTDC1Q4AE62 458 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 NSUN5P2Q63ZY6 315 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 TYW3Q6IPR3 259 aaKnown RBP15.24■□□□□ 0.03
TRIM28-215ENST00000601150 FRRS1Q6ZNA5 592 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 ZNF619Q8N2I2 560 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 OR5M1Q8NGP8 315 aa15.24■□□□□ 0.03
TRIM28-215ENST00000601150 LILRB4Q8NHJ6 448 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms