RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 PKDREJQ9NTG1 2253 aa14.67□□□□□ -0.06
LSM4-206ENST00000600289 ZNF469Q96JG9 3925 aaPredicted RBP14.67□□□□□ -0.06
LSM4-206ENST00000600289 KIAA1549Q9HCM3 1950 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 C9JVG2 144 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 NDUFB5O43674 189 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 CLDN14O95500 239 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 KHKP50053 298 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 POLR2JP52435 117 aaKnown RBP14.66□□□□□ -0.06
LSM4-206ENST00000600289 ATP12AP54707 1039 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 NUP107P57740 925 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 STX1BP61266 288 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 RPS26P62854 115 aaKnown RBP14.66□□□□□ -0.06
LSM4-206ENST00000600289 STX5Q13190 355 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 RCAN2Q14206 197 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 BCL2A1Q16548 175 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 ACSF3Q4G176 576 aaPredicted RBP14.66□□□□□ -0.06
LSM4-206ENST00000600289 KLHL26Q53HC5 615 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 HSP90B2PQ58FF3 399 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 RIPPLY2Q5TAB7 128 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 SPNS3Q6ZMD2 512 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 OR9I1Q8NGQ6 314 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 ZPLD1Q8TCW7 415 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 INPP5KQ9BT40 448 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 ZNF350Q9GZX5 532 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 OR51I1Q9H343 314 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 RMND5AQ9H871 391 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 MED11Q9P086 117 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 DOCK7Q96N67 2140 aa14.66□□□□□ -0.06
LSM4-206ENST00000600289 A0A087WZY1 265 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 C7orf72A4D263 438 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 CD8B2A6NJW9 211 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 RFXANKO14593 260 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 STX11O75558 287 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 EPPINO95925 133 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 HPGDP15428 266 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 HK1P19367 917 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 CHRNB4P30926 498 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 CHI3L1P36222 383 aaPredicted RBP14.65□□□□□ -0.06
LSM4-206ENST00000600289 CDKN2CP42773 168 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 LHX2P50458 406 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 ANXA11P50995 505 aaKnown RBP14.65□□□□□ -0.06
LSM4-206ENST00000600289 ZNF630Q2M218 657 aaPredicted RBP14.65□□□□□ -0.06
LSM4-206ENST00000600289 TMEM44Q2T9K0 475 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 FLYWCH1Q4VC44 716 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 LACC1Q8IV20 430 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 ITCHQ96J02 903 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 SFXN2Q96NB2 322 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 UCN2Q96RP3 112 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 SAP130Q9H0E3 1048 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 CCDC134Q9H6E4 229 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 RNF6Q9Y252 685 aa14.65□□□□□ -0.06
LSM4-206ENST00000600289 ZNF708P17019 499 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 ZNF17P17021 662 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 TIMP3P35625 211 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 SUMO3P55854 103 aaPredicted RBP14.64□□□□□ -0.07
LSM4-206ENST00000600289 PMPCAQ10713 525 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 FUT5Q11128 374 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 CDSNQ15517 529 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 CD226Q15762 336 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 ZNF141Q15928 474 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 TIGD2Q4W5G0 525 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.64□□□□□ -0.07
LSM4-206ENST00000600289 ATAD3BQ5T9A4 648 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 NSUN5P2Q63ZY6 315 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 C16orf62Q7Z3J2 963 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 ADGRE4PQ86SQ3 457 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 ZFP90Q8TF47 636 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 SDCCAG3Q96C92 435 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 CAMK2AQ9UQM7 478 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 LIPT1Q9Y234 373 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 DTNAQ9Y4J8 743 aa14.64□□□□□ -0.07
LSM4-206ENST00000600289 MBD3L4A6NDZ8 208 aaPredicted RBP14.63□□□□□ -0.07
LSM4-206ENST00000600289 MBD3L3A6NE82 208 aaPredicted RBP14.63□□□□□ -0.07
LSM4-206ENST00000600289 MBD3L5A6NJ08 208 aaPredicted RBP14.63□□□□□ -0.07
LSM4-206ENST00000600289 PRSS44E7EML9 344 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 H3BNH8 94 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 HMGN4O00479 90 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 KIAA0513O60268 411 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 KRT75O95678 551 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 OR12D1P0DN82 309 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 PEPDP12955 493 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 HOXB9P17482 250 aaPredicted RBP14.63□□□□□ -0.07
LSM4-206ENST00000600289 CEACAM8P31997 349 aaPredicted RBP14.63□□□□□ -0.07
LSM4-206ENST00000600289 ADH7P40394 386 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 MVDP53602 400 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 CLDN18P56856 261 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 SQLEQ14534 574 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 BLOC1S3Q6QNY0 202 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 ZNF621Q6ZSS3 439 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 SEM1Q6ZVN7 128 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 RNF130Q86XS8 419 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 FUNDC1Q8IVP5 155 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 LILRB4Q8NHJ6 448 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 B4GALNT2Q8NHY0 566 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 MBD3L2Q8NHZ7 208 aaPredicted RBP14.63□□□□□ -0.07
LSM4-206ENST00000600289 CA5BP1Q8WTZ4 195 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 GTF2H4Q92759 462 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 ZBTB8AQ96BR9 441 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 ROPN1LQ96C74 230 aa14.63□□□□□ -0.07
LSM4-206ENST00000600289 PIGQQ9BRB3 760 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms