RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GABRA3P34903 492 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 MAP3K8P41279 467 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 CYB561P49447 251 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 CRYBA2P53672 197 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 RIPK1Q13546 671 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 ZNHIT3Q15649 155 aaPredicted RBP11.62□□□□□ -0.55
UPF1-208ENST00000600012 MTX3Q5HYI7 312 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 CCNJQ5T5M9 372 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 ATAD3BQ5T9A4 648 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 INTS11Q5TA45 600 aaKnown RBP11.62□□□□□ -0.55
UPF1-208ENST00000600012 CCDC80Q76M96 950 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 HMGN2P46Q86SG4 172 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 DOLPP1Q86YN1 238 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 C9orf40Q8IXQ3 194 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 C10orf67Q8IYJ2 551 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 POGLUT1Q8NBL1 392 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 MORN4Q8NDC4 146 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 NFAM1Q8NET5 270 aaPredicted RBP11.62□□□□□ -0.55
UPF1-208ENST00000600012 OR10Q1Q8NGQ4 319 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 GPR151Q8TDV0 419 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 CANT1Q8WVQ1 401 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 HOXB13Q92826 284 aaPredicted RBP11.62□□□□□ -0.55
UPF1-208ENST00000600012 SLCO4A1Q96BD0 722 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 TAMM41Q96BW9 452 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 GAL3ST4Q96RP7 486 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 DMRTA2Q96SC8 542 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 STACQ99469 402 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 TRIM45Q9H8W5 580 aaPredicted RBP11.62□□□□□ -0.55
UPF1-208ENST00000600012 DCAF13Q9NV06 445 aaKnown RBP11.62□□□□□ -0.55
UPF1-208ENST00000600012 EXD2Q9NVH0 621 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 GIN1Q9NXP7 522 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 COPS7AQ9UBW8 275 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 PRODH2Q9UF12 536 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 AURKCQ9UQB9 309 aa11.62□□□□□ -0.55
UPF1-208ENST00000600012 HIVEP1P15822 2718 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 M0QX08 132 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 PRKD3O94806 890 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 PGM3O95394 542 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 H6PDO95479 791 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 AGR2O95994 175 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 TRHRP34981 398 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 CLCN2P51788 898 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 CRISP3P54108 245 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 MLF1P58340 268 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 POU6F2P78424 691 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 HSF1Q00613 529 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 PSG6Q00889 435 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 CHRNEQ04844 493 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 CYBRD1Q53TN4 286 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 DCST2Q5T1A1 773 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 ZNF468Q5VIY5 522 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 HEPHL1Q6MZM0 1159 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 AAGABQ6PD74 315 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 FIGNL1Q6PIW4 674 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 NCCRP1Q6ZVX7 275 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 PATL1Q86TB9 770 aaKnown RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 CHERPQ8IWX8 916 aaKnown RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 ACBD4Q8NC06 268 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 B3GNT7Q8NFL0 401 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 OR4N2Q8NGD1 307 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 OR52E4Q8NGH9 312 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 BBS10Q8TAM1 723 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 CA5BP1Q8WTZ4 195 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 RMND5BQ96G75 393 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 SEPHS2Q99611 448 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 TREX2Q9BQ50 279 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 ENKD1Q9H0I2 346 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 SLC38A1Q9H2H9 487 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 DUSP22Q9NRW4 184 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 COQ3Q9NZJ6 369 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 NKX1-2Q9UD57 310 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 ZNF223Q9UK11 482 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 LIPT1Q9Y234 373 aa11.61□□□□□ -0.55
UPF1-208ENST00000600012 KLF13Q9Y2Y9 288 aaPredicted RBP11.61□□□□□ -0.55
UPF1-208ENST00000600012 DNAJC13O75165 2243 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 ADAM10O14672 748 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 TFECO14948 347 aaPredicted RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 TPST1O60507 370 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 MT-ND1P03886 318 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 GPIP06744 558 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 CT45A8P0DMV1 189 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 CT45A9P0DMV2 189 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 PSMA4P25789 261 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 SLC7A1P30825 629 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 RFX3P48380 749 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 HLCSP50747 726 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 GPR143P51810 404 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 HPCAP84074 193 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 EBPQ15125 230 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 ARHGAP11BQ3KRB8 267 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 CT45A2Q5DJT8 189 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 RNFT1Q5M7Z0 435 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 TBCELQ5QJ74 424 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 ZFP1Q6P2D0 407 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 C3P1Q6ZMU1 363 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 FRRS1Q6ZNA5 592 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 LRRC74BQ6ZQY2 392 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 CBLL1Q75N03 491 aa11.6□□□□□ -0.55
UPF1-208ENST00000600012 EIF3MQ7L2H7 374 aaKnown RBP11.6□□□□□ -0.55
UPF1-208ENST00000600012 VTCN1Q7Z7D3 282 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms