RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 FLRT3Q9NZU0 649 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 EPHA6Q9UF33 1036 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 TESQ9UGI8 421 aaKnown RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 OSGIN1Q9UJX0 560 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 MRPS33Q9Y291 106 aaKnown RBP13.39□□□□□ -0.27
VRK3-217ENST00000599538 PCDHGA3Q9Y5H0 932 aa13.39□□□□□ -0.27
VRK3-217ENST00000599538 HEATR5AQ86XA9 2040 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 FITM1A5D6W6 292 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 TMEM150CB9EJG8 249 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 CLDN4O14493 209 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 RFPL3O75679 317 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 CLPSP04118 112 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 IFNA16P05015 189 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 DRD5P21918 477 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 ALAS2P22557 587 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 CSTF2P33240 577 aaKnown RBP eCLIP13.38□□□□□ -0.27
VRK3-217ENST00000599538 AFF3P51826 1226 aaKnown RBP13.38□□□□□ -0.27
VRK3-217ENST00000599538 NDUFAF6Q330K2 333 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 SLC25A30Q5SVS4 291 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 GARNL3Q5VVW2 1013 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 MEDAGQ5VYS4 303 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 AMER2Q8N7J2 671 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 GRHL3Q8TE85 626 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 BORCS5Q969J3 196 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 ZDHHC12Q96GR4 267 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 PLEKHA8Q96JA3 519 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 SAMD8Q96LT4 415 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 HHATLQ9HCP6 504 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 PI4KAP42356 2102 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 WDR87Q6ZQQ6 2873 aa13.38□□□□□ -0.27
VRK3-217ENST00000599538 SYNDIG1LA6NDD5 238 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 WWP2O00308 870 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 MAGEB3O15480 346 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 RPLP0P05388 317 aaKnown RBP13.37□□□□□ -0.27
VRK3-217ENST00000599538 ETV5P41161 510 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 STAT5AP42229 794 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 ETV1P50549 477 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 BNC1Q01954 994 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 SHBQ15464 509 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 AP1ARQ63HQ0 302 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 C19orf48Q6RUI8 117 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 SLC36A4Q6YBV0 504 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 HSDL2Q6YN16 418 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 ADCK1Q86TW2 530 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 ZSCAN1Q8NBB4 408 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 BBS1Q8NFJ9 593 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 TMEM239Q8WW34 195 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 YIPF2Q9BWQ6 316 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 TAPBPLQ9BX59 468 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 RAB33BQ9H082 229 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 OR10A5Q9H207 317 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 MEPEQ9NQ76 525 aaPredicted RBP13.37□□□□□ -0.27
VRK3-217ENST00000599538 LANCL2Q9NS86 450 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 CUTCQ9NTM9 273 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 SIT1Q9Y3P8 196 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 FER1L5A0AVI2 2057 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 AGRPO00253 132 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 DSCR3O14972 297 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 SURF4O15260 269 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 OR2B3O76000 313 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 FOLR1P15328 257 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 ACAA2P42765 397 aaKnown RBP13.37□□□□□ -0.27
VRK3-217ENST00000599538 SKP1P63208 163 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 FUT7Q11130 342 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 GRM7Q14831 915 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 SPHARQ15513 63 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 ZNHIT3Q15649 155 aaPredicted RBP13.37□□□□□ -0.27
VRK3-217ENST00000599538 DGUOKQ16854 277 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 TCTE1Q5JU00 501 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 NANOGP1Q8N7R0 232 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 ZNF615Q8N8J6 731 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 ANKK1Q8NFD2 765 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 OR4C3Q8NH37 302 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 OR1L3Q8NH93 324 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 CLIP3Q96DZ5 547 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 DUSP15Q9H1R2 295 aaPredicted RBP13.37□□□□□ -0.27
VRK3-217ENST00000599538 DNAJB12Q9NXW2 375 aaKnown RBP13.37□□□□□ -0.27
VRK3-217ENST00000599538 NLGN3Q9NZ94 848 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 CSNK1G3Q9Y6M4 447 aa13.37□□□□□ -0.27
VRK3-217ENST00000599538 FAM183AA6NL82 134 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 A8MUA0 341 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 ZNF749O43361 778 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 NUDT21O43809 227 aaKnown RBP13.36□□□□□ -0.27
VRK3-217ENST00000599538 NGFRP08138 427 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 IFI30P13284 250 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 EPHA4P54764 986 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 HSD17B7P56937 341 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 NR1D2Q14995 579 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 PGGHGQ32M88 737 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 IGFN1Q86VF2 1251 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 SNX29P2Q8IUI4 249 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 TSLPQ969D9 159 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 VMP1Q96GC9 406 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 AKIP1Q9NQ31 210 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 FSCN3Q9NQT6 498 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 POLE3Q9NRF9 147 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 SIDT1Q9NXL6 827 aaKnown RBP13.36□□□□□ -0.27
VRK3-217ENST00000599538 ERGIC3Q9Y282 383 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 A0A0C4DFX4 3053 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 H0YIG0 161 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms