RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 HPF1Q9NWY4 346 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 NDUFAF4Q9P032 175 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 SLC13A4Q9UKG4 626 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 CNOT11Q9UKZ1 510 aaKnown RBP14.79□□□□□ -0.04
SS18-211ENST00000578954 SH3GLB1Q9Y371 365 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 KCNMB2Q9Y691 235 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 ENPP4Q9Y6X5 453 aa14.79□□□□□ -0.04
SS18-211ENST00000578954 NINQ8N4C6 2090 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 H3BNH8 94 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 M0R3H8 397 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 FMO6PO60774 539 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 BCAS1O75363 584 aaPredicted RBP14.78□□□□□ -0.04
SS18-211ENST00000578954 PRSS23O95084 383 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ATP6V1G2O95670 118 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ITGA2P17301 1181 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 OR1E2P47887 323 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ZNF136P52737 540 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 SNTA1Q13424 505 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 NPTX1Q15818 432 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 DEFB109BQ30KR1 87 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ZNF468Q5VIY5 522 aaPredicted RBP14.78□□□□□ -0.04
SS18-211ENST00000578954 ISLR2Q6UXK2 745 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 CCDC81Q6ZN84 652 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 RTL4Q6ZR62 310 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ZNF440Q8IYI8 595 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 PQLC1Q8N2U9 271 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ZNF614Q8N883 585 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 OR6T1Q8NGN1 323 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 CNOT9Q92600 299 aaKnown RBP14.78□□□□□ -0.04
SS18-211ENST00000578954 FRMD6Q96NE9 622 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ZNF300Q96RE9 604 aaPredicted RBP14.78□□□□□ -0.04
SS18-211ENST00000578954 TBL1XR1Q9BZK7 514 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ZNF552Q9H707 407 aaPredicted RBP14.78□□□□□ -0.04
SS18-211ENST00000578954 HHATLQ9HCP6 504 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 AGPAT4Q9NRZ5 378 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ABI3Q9P2A4 366 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 RIMS3Q9UJD0 308 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 ACAD8Q9UKU7 415 aa14.78□□□□□ -0.04
SS18-211ENST00000578954 IGLV3-32A0A0A0MS00 114 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 MED19A0JLT2 244 aaPredicted RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 ANKRD33BA6NCL7 494 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 H0Y3Z8 333 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 K7ENP7 123 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 EIF4E2O60573 245 aaKnown RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 TPST2O60704 377 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 SEMA7AO75326 666 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 TIPRLO75663 272 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 CSTAP01040 98 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 UBL4AP11441 157 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 ANPEPP15144 967 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 CASP3P42574 277 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 CLK3P49761 638 aaKnown RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 UCNP55089 124 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 RGS8P57771 180 aaPredicted RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 SKP2Q13309 424 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 MFAP5Q13361 173 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 ATP6AP1Q15904 470 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 AGAP7PQ5VUJ5 663 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 INO80CQ6PI98 192 aaPredicted RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 IGFL2Q6UWQ7 119 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 IL20RBQ6UXL0 311 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 ZNF550Q7Z398 422 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 ZNF605Q86T29 641 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 ZNF227Q86WZ6 799 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 RBM45Q8IUH3 476 aaKnown RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 LILRA2Q8N149 483 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 TOR1AIP2Q8NFQ8 470 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 AGAP4Q96P64 663 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 POLR2J2Q9GZM3 115 aaKnown RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 LAT2Q9GZY6 243 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 POLR2J3Q9H1A7 115 aaKnown RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 CPNE5Q9HCH3 593 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 GPR83Q9NYM4 423 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 STMN3Q9NZ72 180 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 CNIH4Q9P003 139 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 C6orf203Q9P0P8 240 aaPredicted RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 TESQ9UGI8 421 aaKnown RBP14.77□□□□□ -0.05
SS18-211ENST00000578954 PRDM4Q9UKN5 801 aa14.77□□□□□ -0.05
SS18-211ENST00000578954 A0A087WV48 116 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 hCG_2039718K7EN88 272 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 ZNF264O43296 627 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 FRS3O43559 492 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 NDUFB5O43674 189 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 DEAF1O75398 565 aaPredicted RBP14.76□□□□□ -0.05
SS18-211ENST00000578954 ANGPTL1O95841 491 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 MT-ND1P03886 318 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 RHCEP18577 417 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 FASP25445 335 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 ACAA2P42765 397 aaKnown RBP14.76□□□□□ -0.05
SS18-211ENST00000578954 CYB561P49447 251 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 BROXQ5VW32 411 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 HMBOX1Q6NT76 420 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 SLC30A6Q6NXT4 461 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 UNQ6494/PRO21346Q6UXR6 183 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 MARCH3Q86UD3 253 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 CYP4Z2PQ8N1L4 340 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 OR5M3Q8NGP4 307 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 VANGL1Q8TAA9 524 aaPredicted RBP14.76□□□□□ -0.05
SS18-211ENST00000578954 PHOSPHO1Q8TCT1 267 aa14.76□□□□□ -0.05
SS18-211ENST00000578954 SNRNP27Q8WVK2 155 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms