RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ADSSP30520 456 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 AXLP30530 894 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 PRDX2P32119 198 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 HTR5AP47898 357 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 STARP49675 285 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 MRPS11P82912 194 aaKnown RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 GGTLC2Q14390 218 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 KARSQ15046 597 aaKnown RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 UBE2V2Q15819 145 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 CARTPTQ16568 116 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 ZSWIM7Q19AV6 140 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 TSPO2Q5TGU0 170 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 GPR157Q5UAW9 335 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 ASPHD2Q6ICH7 369 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 FAM71E1Q6IPT2 247 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 TMEM26Q6ZUK4 368 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 Q7L0L9 218 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 GOLGA7Q7Z5G4 137 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 VPS36Q86VN1 386 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 SNX32Q86XE0 403 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 TMEM252Q8N6L7 170 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 SUMF2Q8NBJ7 301 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 ZBTB44Q8NCP5 570 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 OR2T33Q8NG76 320 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 WDR36Q8NI36 951 aaKnown RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 EXOC6Q8TAG9 804 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 C7orf33Q8WU49 177 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 TMEM121Q9BTD3 319 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 NDUFAF3Q9BU61 184 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 RSPO3Q9BXY4 272 aaPredicted RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 GALPQ9UBC7 116 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 NUFIP1Q9UHK0 495 aaKnown RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 APPL1Q9UKG1 709 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 PRG3Q9Y2Y8 225 aaPredicted RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 EXOSC1Q9Y3B2 195 aaKnown RBP1.65□□□□□ -2.15
VPS35-207ENST00000568191 USP16Q9Y5T5 823 aa1.65□□□□□ -2.15
VPS35-207ENST00000568191 MYO10Q9HD67 2058 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 A8MUA0 341 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 EFNA2O43921 213 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 KERAO60938 352 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 IGKV1-17P01599 117 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 SLC4A1P02730 911 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 XRCC1P18887 633 aaPredicted RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 KIR2DS2P43631 304 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 GNPDA1P46926 289 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 RND3P61587 244 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 MRPS6P82932 125 aaKnown RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 EGFEM1PQ0D2K5 195 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 WASHC5Q12768 1159 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 PPP2R5CQ13362 524 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 ACSF3Q4G176 576 aaPredicted RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 RABGAP1LQ5R372 815 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 LDLRAP1Q5SW96 308 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 OR6B2Q6IFH4 312 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 WDR74Q6RFH5 385 aaPredicted RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 OLFM4Q6UX06 510 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 BTNL3Q6UXE8 466 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 RNF165Q6ZSG1 346 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 CYS1Q717R9 158 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 LRRC70Q7Z2Q7 622 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 NET1Q7Z628 596 aaPredicted RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 ZNF429Q86V71 674 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 LCA5Q86VQ0 697 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 UNC45BQ8IWX7 931 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 ZNF713Q8N859 430 aaPredicted RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 C20orf203Q8NBC4 194 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 PIGCQ92535 297 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 RDH5Q92781 318 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 TXN2Q99757 166 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 ACAT2Q9BWD1 397 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 TEX13AQ9BXU3 409 aaPredicted RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 DDX47Q9H0S4 455 aaKnown RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 NXF3Q9H4D5 531 aaKnown RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 GPN2Q9H9Y4 310 aaPredicted RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 NTN4Q9HB63 628 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 ZDHHC4Q9NPG8 344 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 GDAP2Q9NXN4 497 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 SPRR3Q9UBC9 169 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 XPO7Q9UIA9 1087 aaKnown RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 BTNL2Q9UIR0 455 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 DNPEPQ9ULA0 475 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 ERVW-1Q9UQF0 538 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 STRAPQ9Y3F4 350 aaKnown RBP1.64□□□□□ -2.15
VPS35-207ENST00000568191 PTCH1Q13635 1447 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 RPGRIP1LQ68CZ1 1315 aa1.64□□□□□ -2.15
VPS35-207ENST00000568191 SLIT3O75094 1523 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 WASHC1A8K0Z3 465 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 WASH3PC4AMC7 463 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 K7ENP7 123 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 DLGAP1O14490 977 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 CASKO14936 926 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 TM9SF1O15321 606 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 ZNF264O43296 627 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 TRAF3IP2O43734 574 aaPredicted RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 BCAS2O75934 225 aaPredicted RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 SNAPINO95295 136 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 SLC25A27O95847 323 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 IGLL1P15814 213 aa1.63□□□□□ -2.15
VPS35-207ENST00000568191 H2AFXP16104 143 aaPredicted RBP1.63□□□□□ -2.15
VPS35-207ENST00000568191 MAGP20916 626 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms