RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 IL11P20809 199 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 PLPPR5Q32ZL2 321 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 CCNJQ5T5M9 372 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 ANKRD34AQ69YU3 496 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 PPP4R4Q6NUP7 873 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 MISPQ8IVT2 679 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 COX18Q8N8Q8 333 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 OR6K3Q8NGY3 331 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 OTUB1Q96FW1 271 aaPredicted RBP14.41□□□□□ -0.1
CLN3-229ENST00000567963 ZC3HAV1LQ96H79 300 aaKnown RBP14.41□□□□□ -0.1
CLN3-229ENST00000567963 APOPT1Q96IL0 206 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 SMR3AQ99954 134 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 MECRQ9BV79 373 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 KLHL4Q9C0H6 718 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 EML4Q9HC35 981 aaKnown RBP14.41□□□□□ -0.1
CLN3-229ENST00000567963 ATP6V1HQ9UI12 483 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 MCTS1Q9ULC4 181 aaKnown RBP14.41□□□□□ -0.1
CLN3-229ENST00000567963 EMC9Q9Y3B6 208 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 A0A1W2PQD3 144 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 TMEM114B3SHH9 223 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 SCDO00767 359 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 SCAMP2O15127 329 aaKnown RBP14.4□□□□□ -0.1
CLN3-229ENST00000567963 ARHGEF9O43307 516 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 HSPA4LO95757 839 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 PLGP00747 810 aaPredicted RBP14.4□□□□□ -0.1
CLN3-229ENST00000567963 HMGN2P05204 90 aaKnown RBP14.4□□□□□ -0.1
CLN3-229ENST00000567963 DDX5P17844 614 aaKnown RBP14.4□□□□□ -0.1
CLN3-229ENST00000567963 PRIM2P49643 509 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 ZNF41P51814 821 aaPredicted RBP14.4□□□□□ -0.1
CLN3-229ENST00000567963 ACKR1Q16570 336 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 EXOC3L2Q2M3D2 409 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 ESPNLQ6ZVH7 1005 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 TRABD2AQ86V40 505 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 LRRC75A-AS1Q8N1F1 130 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 OR7A2PQ8NGA2 310 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 OR2W6PQ8NHA6 318 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 JADE3Q92613 823 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 CAVIN3Q969G5 261 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 SH3YL1Q96HL8 342 aaPredicted RBP14.4□□□□□ -0.1
CLN3-229ENST00000567963 RNF145Q96MT1 663 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 STACQ99469 402 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 KLHDC3Q9BQ90 382 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 BTBD2Q9BX70 525 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 DUSP22Q9NRW4 184 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 ZCCHC3Q9NUD5 404 aaKnown RBP14.4□□□□□ -0.1
CLN3-229ENST00000567963 GIN1Q9NXP7 522 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 SLC17A7Q9P2U7 560 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 CLEC4AQ9UMR7 237 aa14.4□□□□□ -0.1
CLN3-229ENST00000567963 A0A0J9YW62 118 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 TNFSF11O14788 317 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 CXCL13O43927 109 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 SMPD2O60906 423 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 SS18L1O75177 396 aaPredicted RBP14.39□□□□□ -0.11
CLN3-229ENST00000567963 PEX11AO75192 247 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 INHBBP09529 407 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 LAMP1P11279 417 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 FPR1P21462 350 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 LOXP28300 417 aaPredicted RBP14.39□□□□□ -0.11
CLN3-229ENST00000567963 MAPK1P28482 360 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 CTBP2P56545 445 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 POU6F2P78424 691 aaPredicted RBP14.39□□□□□ -0.11
CLN3-229ENST00000567963 LASP1Q14847 261 aaKnown RBP14.39□□□□□ -0.11
CLN3-229ENST00000567963 CD226Q15762 336 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 P3H2Q8IVL5 708 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 B4GALNT2Q8NHY0 566 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 POC1BQ8TC44 478 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 CDS1Q92903 461 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 PPP3R2Q96LZ3 170 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 HS3ST6Q96QI5 342 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 PIGUQ9H490 435 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 UBTD1Q9HAC8 227 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 GLRX2Q9NS18 164 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 GIMAP2Q9UG22 337 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 HEATR5AQ86XA9 2040 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 NAV3Q8IVL0 2385 aa14.39□□□□□ -0.11
CLN3-229ENST00000567963 UQCRHLA0A096LP55 91 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 SYNGR4O95473 234 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 THBDP07204 575 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 LINGO3P0C6S8 592 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 ME2P23368 584 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 ADSLP30566 484 aaPredicted RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 HPCAL1P37235 193 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 RPL3P39023 403 aaKnown RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 XKR7Q5GH72 579 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 HBMQ6B0K9 141 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 STAC2Q6ZMT1 411 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 ZCCHC23Q6ZST2 131 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 MTERF4Q7Z6M4 381 aaKnown RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 RIBC1Q8N443 379 aaPredicted RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 OR2V1Q8NHB1 315 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 PSMA8Q8TAA3 256 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 AGR3Q8TD06 166 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 CHMP6Q96FZ7 201 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 C3orf30Q96M34 536 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 TMEM185BQ9H7F4 350 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 L2HGDHQ9H9P8 463 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 SNX8Q9Y5X2 465 aa14.38□□□□□ -0.11
CLN3-229ENST00000567963 NUP214P35658 2090 aaPredicted RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 RAI1Q7Z5J4 1906 aaPredicted RBP14.38□□□□□ -0.11
CLN3-229ENST00000567963 SLU7O95391 586 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms