RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 DTNAQ9Y4J8 743 aa17.76■□□□□ 0.43
CLN3-225ENST00000566824 SHISA8B8ZZ34 492 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 NPIPA2E9PIF3 369 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 NPIPA3F8WFD2 350 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 SLC19A2O60779 497 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 GUSBP08236 651 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 HPGDP15428 266 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 DPP4P27487 766 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 MAGEA8P43361 318 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 ANXA11P50995 505 aaKnown RBP17.75■□□□□ 0.43
CLN3-225ENST00000566824 TXNL4AP83876 142 aaKnown RBP17.75■□□□□ 0.43
CLN3-225ENST00000566824 MAPRE2Q15555 327 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 RABL3Q5HYI8 236 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 EMC4Q5J8M3 183 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 ARSKQ6UWY0 536 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 OR5M1Q8NGP8 315 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 NEIL3Q8TAT5 605 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 LRRC58Q96CX6 371 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 LDAHQ9H6V9 325 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 A4GALTQ9NPC4 353 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 POLE3Q9NRF9 147 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 MRGBPQ9NV56 204 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 P2RX2Q9UBL9 471 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 SH3BGRL2Q9UJC5 107 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 TINAGQ9UJW2 476 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 CARD8Q9Y2G2 431 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 RPH3AQ9Y2J0 694 aaPredicted RBP17.75■□□□□ 0.43
CLN3-225ENST00000566824 L3MBTL1Q9Y468 752 aa17.75■□□□□ 0.43
CLN3-225ENST00000566824 DIDO1Q9BTC0 2240 aaKnown RBP17.74■□□□□ 0.43
CLN3-225ENST00000566824 SERINC4A6NH21 518 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 SUSD5O60279 629 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 SEMA7AO75326 666 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 FAM107AO95990 144 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 SRD5A2P31213 254 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 PTGS2P35354 604 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 B3GALT5-AS1P59052 145 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 FADDQ13158 208 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 MMEL1Q495T6 779 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 COQ5Q5HYK3 327 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 NANOGP8Q6NSW7 305 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 ARHGAP11AQ6P4F7 1023 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 C3P1Q6ZMU1 363 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 Q6ZPB1 254 aaPredicted RBP17.74■□□□□ 0.43
CLN3-225ENST00000566824 PTOV1Q86YD1 416 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 ZNF527Q8NB42 609 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 OR5M9Q8NGP3 310 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 OR14L1PQ8NHC6 308 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 NFKBIDQ8NI38 313 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 RP9Q8TA86 221 aaKnown RBP17.74■□□□□ 0.43
CLN3-225ENST00000566824 C1GALT1C1Q96EU7 318 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 RAD21L1Q9H4I0 556 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 EXO5Q9H790 373 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 NANOGQ9H9S0 305 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 TAS2R10Q9NYW0 307 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 USP22Q9UPT9 525 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 DSPPQ9NZW4 1301 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 PCNX1Q96RV3 2341 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 KIAA1549Q9HCM3 1950 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 LRRK2Q5S007 2527 aa17.74■□□□□ 0.43
CLN3-225ENST00000566824 BBIP1A8MTZ0 92 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 AQP7O14520 342 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 HCN1O60741 890 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 STSP08842 583 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 ARAFP10398 606 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 ABOP16442 354 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 RPS4Y1P22090 263 aaKnown RBP17.73■□□□□ 0.43
CLN3-225ENST00000566824 PPIBP23284 216 aaKnown RBP17.73■□□□□ 0.43
CLN3-225ENST00000566824 GZMMP51124 257 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 HPCAP84074 193 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 GCNT6Q5T4J0 391 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 NCCRP1Q6ZVX7 275 aaPredicted RBP17.73■□□□□ 0.43
CLN3-225ENST00000566824 DOLPP1Q86YN1 238 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 TREX2Q9BQ50 279 aaPredicted RBP17.73■□□□□ 0.43
CLN3-225ENST00000566824 THUMPD3Q9BV44 507 aaKnown RBP17.73■□□□□ 0.43
CLN3-225ENST00000566824 PNPLA3Q9NST1 481 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 GMPR2Q9P2T1 348 aaKnown RBP17.73■□□□□ 0.43
CLN3-225ENST00000566824 DKKL1Q9UK85 242 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 ICAM5Q9UMF0 924 aa17.73■□□□□ 0.43
CLN3-225ENST00000566824 TRGV8A0A0C4DH27 118 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 AGAP5A6NIR3 686 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 EVPLLA8MZ36 301 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 AIM2O14862 343 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 HCRTR2O43614 444 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 RNF224P0DH78 156 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 BMP7P18075 431 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 HK1P19367 917 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 STARP49675 285 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 GFRA1P56159 465 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 DSCR4P56555 118 aaPredicted RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 CRYZQ08257 329 aaKnown RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 FGFBP1Q14512 234 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 TOMM34Q15785 309 aaPredicted RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 CD163Q86VB7 1156 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 VRK2Q86Y07 508 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 B4GALNT2Q8NHY0 566 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 FAM57AQ8TBR7 257 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 CNOT9Q92600 299 aaKnown RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 UGT2B28Q9BY64 529 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 PIF1Q9H611 641 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 KAT8Q9H7Z6 458 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms