RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 KCNE3Q9Y6H6 103 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 DOCK7Q96N67 2140 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 A0A1W2PQD3 144 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 FAM221AA4D161 298 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 TNFSF13O75888 250 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 HBA1P69905 142 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 PON3Q15166 354 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 TMEM44Q2T9K0 475 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 DCST2Q5T1A1 773 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 OR4F3Q6IEY1 312 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 PPP4R4Q6NUP7 873 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 CAMKMTQ7Z624 323 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 KIRREL3Q8IZU9 778 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 ANKRD42Q8N9B4 389 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 B4GALNT2Q8NHY0 566 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 FNDC9Q8TBE3 224 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 PHOSPHO1Q8TCT1 267 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 SFXN5Q8TD22 340 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 ACTRT2Q8TDY3 377 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 ZNF845Q96IR2 970 aaPredicted RBP18.67■□□□□ 0.58
CLN3-219ENST00000565778 SORT1Q99523 831 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 PRRG4Q9BZD6 226 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 DPY30Q9C005 99 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 GPATCH2Q9NW75 528 aa18.67■□□□□ 0.58
CLN3-219ENST00000565778 EIF1AYO14602 144 aaKnown RBP18.66■□□□□ 0.58
CLN3-219ENST00000565778 MSTNO14793 375 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 OPN1LWP04000 364 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 EIF1AXP47813 144 aaKnown RBP18.66■□□□□ 0.58
CLN3-219ENST00000565778 C21orf58P58505 322 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 SIRPAP78324 504 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 TESK1Q15569 626 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 C6orf120Q7Z4R8 191 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 WDR75Q8IWA0 830 aaKnown RBP18.66■□□□□ 0.58
CLN3-219ENST00000565778 CLECL1Q8IZS7 167 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 ZNF527Q8NB42 609 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 ZBTB8AQ96BR9 441 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 STARD4Q96DR4 205 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 OR7D2Q96RA2 312 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 NUF2Q9BZD4 464 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 MED17Q9NVC6 651 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 PNPOQ9NVS9 261 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 ZNF175Q9Y473 711 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 PCNX3Q9H6A9 2034 aa18.66■□□□□ 0.58
CLN3-219ENST00000565778 NPIPA5A0A0B4J1W7 369 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 NPIPA7E9PJI5 369 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 H3BNH8 94 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 GTPBP1O00178 669 aaKnown RBP18.65■□□□□ 0.58
CLN3-219ENST00000565778 CASKO14936 926 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 NPIPA8P0DM63 369 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 ZNF17P17021 662 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 LBPP18428 481 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 MATN1P21941 496 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 CPOXP36551 454 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 KIR2DL2P43627 348 aaPredicted RBP18.65■□□□□ 0.58
CLN3-219ENST00000565778 CD226Q15762 336 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 KLHL26Q53HC5 615 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 VWA1Q6PCB0 445 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 BTLAQ7Z6A9 289 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 MTERF4Q7Z6M4 381 aaKnown RBP18.65■□□□□ 0.58
CLN3-219ENST00000565778 CDC20BQ86Y33 519 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 GTPBP8Q8N3Z3 284 aaPredicted RBP18.65■□□□□ 0.58
CLN3-219ENST00000565778 METTL25Q8N6Q8 603 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 RNF145Q96MT1 663 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 NPAS1Q99742 590 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 LIME1Q9H400 295 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 NDRG3Q9UGV2 375 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 EDARQ9UNE0 448 aa18.65■□□□□ 0.58
CLN3-219ENST00000565778 DUXAA6NLW8 204 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 NUDT14O95848 222 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 ME2P23368 584 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 RNF144AP50876 292 aaPredicted RBP18.64■□□□□ 0.57
CLN3-219ENST00000565778 ART1P52961 327 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 IST1P53990 364 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 ATP12AP54707 1039 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 RAC1P63000 192 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 OCRLQ01968 901 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 FAM27E3Q08E93 113 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 BST1Q10588 318 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 PLPPR5Q32ZL2 321 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 GGNQ86UU5 652 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 CLEC4FQ8N1N0 589 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 VPS37AQ8NEZ2 397 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 OR5D16Q8NGK9 328 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 OR4A15Q8NGL6 344 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 DACH2Q96NX9 599 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 RNF122Q9H9V4 155 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 HAO1Q9UJM8 370 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 CARD8Q9Y2G2 431 aa18.64■□□□□ 0.57
CLN3-219ENST00000565778 SH3D21A4FU49 640 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 RNASET2O00584 256 aaKnown RBP18.63■□□□□ 0.57
CLN3-219ENST00000565778 CPSF4O95639 269 aaKnown RBP18.63■□□□□ 0.57
CLN3-219ENST00000565778 RPS26P62854 115 aaKnown RBP18.63■□□□□ 0.57
CLN3-219ENST00000565778 ANXA8L1Q5VT79 327 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 SPNS3Q6ZMD2 512 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 ZNF614Q8N883 585 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 OR8J2Q8NGG1 315 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 OR10D3Q8NH80 312 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 SDF2Q99470 211 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 KLHDC3Q9BQ90 382 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms