RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 FRKP42685 505 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 CRYBB2P43320 205 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 HTR3AP46098 478 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 GSTM5P46439 218 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 RFX2P48378 723 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 IDH2P48735 452 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 SPINT3P49223 89 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 PRIM2P49643 509 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 NEK2P51955 445 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ACLYP53396 1101 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CRISP1P54107 249 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CDH12P55289 794 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ARPP19P56211 112 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CDC42P60953 191 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 COPZ1P61923 177 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SUMO2P61956 95 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 SNRPD1P62314 119 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 TBPL1P62380 186 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 HBA1P69905 142 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SLC7A9P82251 487 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 IL1RL1Q01638 556 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 IRF8Q02556 426 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ST3GAL4Q11206 333 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 LMAN2Q12907 356 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 MLLT11Q13015 90 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 SCARB2Q14108 478 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 DOC2AQ14183 400 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 GPNMBQ14956 572 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 VEPH1Q14D04 833 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CDK10Q15131 360 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SF3B4Q15427 424 aaKnown RBP eCLIP2.3□□□□□ -2.04
SPG11-223ENST00000560858 TSTQ16762 297 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 NDUFA9Q16795 377 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 DUSP6Q16828 381 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 MPEG1Q2M385 716 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 EXOC3L2Q2M3D2 409 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TCTN1Q2MV58 587 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 GLYR1Q49A26 553 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 ARMCX4Q5H9R4 360 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SPANXN2Q5MJ10 180 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SLC25A30Q5SVS4 291 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.3□□□□□ -2.04
SPG11-223ENST00000560858 HENMT1Q5T8I9 393 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 MFSD4BQ5TF39 518 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 NXNL2Q5VZ03 156 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SAXO2Q658L1 398 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TIGD3Q6B0B8 471 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 PLAG1Q6DJT9 500 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 THOC7Q6I9Y2 204 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 FAM71E1Q6IPT2 247 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 XKRXQ6PP77 449 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 PRSS55Q6UWB4 352 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 ZNF852Q6ZMS4 543 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 Q6ZPB1 254 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 ZNF621Q6ZSS3 439 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CCDC149Q6ZUS6 474 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 IKBIPQ70UQ0 350 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 GDPD3Q7L5L3 318 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 COMMD6Q7Z4G1 85 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 THOC6Q86W42 341 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 TRIM69Q86WT6 500 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 HEATR4Q86WZ0 1026 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TMC8Q8IU68 726 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SLC44A2Q8IWA5 706 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 RAVER1Q8IY67 606 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 GPR65Q8IYL9 337 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TCTE3Q8IZS6 198 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 APCDD1Q8J025 514 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CYP4Z2PQ8N1L4 340 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CLIP4Q8N3C7 705 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 STX19Q8N4C7 294 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 RNF175Q8N4F7 328 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TRAM1L1Q8N609 369 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SLC5A8Q8N695 610 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CLDN22Q8N7P3 220 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 AQP11Q8NBQ7 271 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 B3GNT7Q8NFL0 401 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 OR7G3Q8NG95 312 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 GPR32P1Q8NGA4 272 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 OR9Q2Q8NGE9 314 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 OR4A15Q8NGL6 344 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 OR6K2Q8NGY2 324 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 NFKBIDQ8NI38 313 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 FIBINQ8TAL6 211 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SPPL2AQ8TCT8 520 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 C17orf50Q8WW18 174 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ASB5Q8WWX0 329 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SLC7A6Q92536 515 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 MAL2Q969L2 176 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TIFAQ96CG3 184 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SCRN2Q96FV2 425 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TRMT61AQ96FX7 289 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 PDXPQ96GD0 296 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ZC3HAV1LQ96H79 300 aaKnown RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 PPP1R16AQ96I34 528 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TPD52L3Q96J77 140 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 RIPOR3Q96MK2 946 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 Q96MT0 163 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 VPS35Q96QK1 796 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 OR4K3Q96R72 315 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms