RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	DUSP5	Q16690	384 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	ZNF385B	Q569K4	471 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	IL23R	Q5VWK5	629 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	CDC73	Q6P1J9	531 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	LRRC34	Q8IZ02	419 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	SLC16A11	Q8NCK7	471 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	B4GALNT2	Q8NHY0	566 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	FAM110B	Q8TC76	370 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	OIT3	Q8WWZ8	545 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	GIMAP5	Q96F15	307 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	PGM2	Q96G03	612 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	REXO5	Q96IC2	774 aa	Known RBP	12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	GMPPA	Q96IJ6	420 aa	Predicted RBP	12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	ASIC5	Q9NY37	505 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	VDAC3	Q9Y277	283 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	TESMIN	Q9Y4I5	508 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	ABCA4	P78363	2273 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	MED13L	Q71F56	2210 aa		12.69	□□□□□ -0.38
TPM1-223	ENST00000560445	AKAP6	Q13023	2319 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	MPDZ	O75970	2070 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	C16orf97	H3BN30	126 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	EIF1AY	O14602	144 aa	Known RBP	12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	TYROBP	O43914	113 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	SKAP2	O75563	359 aa	Predicted RBP	12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	POU2F1	P14859	743 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	ADH6	P28332	368 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	EIF1AX	P47813	144 aa	Known RBP	12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	RAC1	P63000	192 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	EMX2	Q04743	252 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	SNTB1	Q13884	538 aa	Known RBP	12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	DPY19L1	Q2PZI1	675 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	TMEM44	Q2T9K0	475 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	PPP4R4	Q6NUP7	873 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	FIGNL1	Q6PIW4	674 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	ZCCHC23	Q6ZST2	131 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	FAM214B	Q7L5A3	538 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	EXOC3L1	Q86VI1	746 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	OR6K3	Q8NGY3	331 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	OR4C3	Q8NH37	302 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	LINC01560	Q8TB33	94 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	FBXO30	Q8TB52	745 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	FNDC9	Q8TBE3	224 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	COQ8B	Q96D53	544 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	TACO1	Q9BSH4	297 aa	Known RBP	12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	MED18	Q9BUE0	208 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	DUSP26	Q9BV47	211 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	CENPH	Q9H3R5	247 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	CCM2L	Q9NUG4	571 aa	Predicted RBP	12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	FLRT3	Q9NZU0	649 aa		12.68	□□□□□ -0.38
TPM1-223	ENST00000560445	KIAA1549	Q9HCM3	1950 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	ESPN	B1AK53	854 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	GTPBP1	O00178	669 aa	Known RBP	12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	NUDT14	O95848	222 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	IGKV1D-16	P01601	117 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	LAMP1	P11279	417 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	CD99	P14209	185 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	SOAT1	P35610	550 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	ANXA11	P50995	505 aa	Known RBP	12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	SIRPA	P78324	504 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	PTGR1	Q14914	329 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	DCST2	Q5T1A1	773 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	ATAD3B	Q5T9A4	648 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	TOR1AIP2	Q8NFQ8	470 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	OR7A2P	Q8NGA2	310 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	PHOSPHO1	Q8TCT1	267 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	FIG4	Q92562	907 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	CDS1	Q92903	461 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	STARD4	Q96DR4	205 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	C1orf50	Q9BV19	199 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	MED17	Q9NVC6	651 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	EXD2	Q9NVH0	621 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	BEX4	Q9NWD9	120 aa	Predicted RBP	12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	PLEKHA6	Q9Y2H5	1048 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	ACTL7B	Q9Y614	415 aa		12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	GPC6	Q9Y625	555 aa	Predicted RBP	12.67	□□□□□ -0.38
TPM1-223	ENST00000560445	ITPR3	Q14573	2671 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	ADAMDEC1	O15204	470 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	HRG	P04196	525 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	FPR1	P21462	350 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	ETV4	P43268	484 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	P2RX1	P51575	399 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	CLNS1A	P54105	237 aa	Known RBP	12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	CLDN8	P56748	225 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	CLDN20	P56880	219 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	ABCE1	P61221	599 aa	Known RBP	12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	LRRC74A	Q0VAA2	488 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	RNPS1	Q15287	305 aa	Known RBP	12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	PLPPR5	Q32ZL2	321 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	EXOSC6	Q5RKV6	272 aa	Known RBP	12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	ANXA8L1	Q5VT79	327 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	TGIF2LY	Q8IUE0	185 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	OR10D3	Q8NH80	312 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	OR2V1	Q8NHB1	315 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	CPNE4	Q96A23	557 aa	Predicted RBP	12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	SH3YL1	Q96HL8	342 aa	Predicted RBP	12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	KLHL15	Q96M94	604 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	USB1	Q9BQ65	265 aa	Known RBP	12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	GP6	Q9HCN6	339 aa		12.66	□□□□□ -0.38
TPM1-223	ENST00000560445	SIRT3	Q9NTG7	399 aa	Predicted RBP	12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms