RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SNAP47Q5SQN1 464 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 MEDAGQ5VYS4 303 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 PHC2Q8IXK0 858 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 LINC00471Q8N535 108 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 RIT1Q92963 219 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 SLC38A2Q96QD8 506 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 TBX5Q99593 518 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 NUAK2Q9H093 628 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 IRF2BPLQ9H1B7 796 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 MMP27Q9H306 513 aa9.85□□□□□ -0.83
CUX1-217ENST00000558836 TRIM45Q9H8W5 580 aaPredicted RBP9.85□□□□□ -0.83
CUX1-217ENST00000558836 TRAV27A0A087WT01 109 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 IGHV5-51A0A0C4DH38 117 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 C10orf142B7Z368 130 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 PRODHO43272 600 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 RFPL3O75679 317 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 AGR2O95994 175 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 LALBAP00709 142 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 ZGLP1P0C6A0 271 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CLEC2LP0C7M8 214 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 SRFP11831 508 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 MYL12AP19105 171 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 PSMA1P25786 263 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 CSNK1EP49674 416 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 POU6F2P78424 691 aaPredicted RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 TDGQ13569 410 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CARTPTQ16568 116 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 C22orf42Q6IC83 251 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 SLC36A4Q6YBV0 504 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 ZNF620Q6ZNG0 422 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 RANBP3LQ86VV4 465 aaPredicted RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 SLC22A16Q86VW1 577 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CPOQ8IVL8 374 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 SYT14Q8NB59 555 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 PROKR2Q8NFJ6 384 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 LMF1Q96S06 567 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 BARHL1Q9BZE3 327 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 SPRTNQ9H040 489 aaPredicted RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 MARCH7Q9H992 704 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 PALMDQ9NP74 551 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 STK25O00506 426 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 SURF4O15260 269 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 OR5F1O95221 314 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 IGLV3-19P01714 112 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 DBIP07108 87 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 SAGP10523 405 aaPredicted RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 IMPDH2P12268 514 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 FPR3P25089 353 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CD38P28907 300 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CD40LGP29965 261 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 S100A5P33763 92 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 SLC16A1P53985 500 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 RAB38P57729 211 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 FXYD6P3P58550 94 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 ZNF791Q3KP31 576 aaPredicted RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 PLBD1Q6P4A8 553 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 C19orf48Q6RUI8 117 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 GATAD2AQ86YP4 633 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 PARP16Q8N5Y8 322 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 POGLUT1Q8NBL1 392 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 OR13C2Q8NGS9 318 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 HTRA1Q92743 480 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CTHRC1Q96CG8 243 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 C1GALT1C1Q96EU7 318 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 PHF7Q9BWX1 381 aaPredicted RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 HCAR1Q9BXC0 346 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 UBQLN3Q9H347 655 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 DUSP22Q9NRW4 184 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 IL20Q9NYY1 176 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 DIMT1Q9UNQ2 313 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 RABL2BQ9UNT1 228 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 ASCC3Q8N3C0 2202 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 A8MUA0 341 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 BRINP1O60477 761 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 IFNA16P05015 189 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 PROS1P07225 676 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 LIMS3P0CW19 117 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 LIMS4P0CW20 117 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 S1PR1P21453 382 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 ALAS2P22557 587 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CAV3P56539 151 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 RPL6Q02878 288 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 C1DQ13901 141 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 OXA1LQ15070 435 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 THSD4Q6ZMP0 1018 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 CADM2Q8N3J6 435 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 TMEM239Q8WW34 195 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 OR52D1Q9H346 318 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 HINT3Q9NQE9 182 aaKnown RBP9.84□□□□□ -0.83
CUX1-217ENST00000558836 GPR27Q9NS67 375 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 ERVK13-1Q9NX77 482 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 NLGN3Q9NZ94 848 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 ERVK-19Q9WJR5 959 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 B3GNT3Q9Y2A9 372 aa9.84□□□□□ -0.83
CUX1-217ENST00000558836 MPDZO75970 2070 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 A0A087WV62 115 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 TRAPPC13A5PLN9 417 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 FAM221BA6H8Z2 402 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 LRRN3E7EW58 273 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms