RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FBXL2Q9UKC9 423 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ZNF860A6NHJ4 632 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 CDC42EP2O14613 210 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 LCMT2O60294 686 aaKnown RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 PCCBP05166 539 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TPOP07202 933 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 RAB3BP20337 219 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 NPR2P20594 1047 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 LGALS3BPQ08380 585 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 OPCMLQ14982 345 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 BEX5Q5H9J7 111 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TMEM201Q5SNT2 666 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 TMEM81Q6P7N7 255 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 OR6K6Q8NGW6 343 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 OR8S1Q8NH09 359 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ZCCHC10Q8TBK6 192 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 KIAA1143Q96AT1 154 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 PPP1R16AQ96I34 528 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 PRRC1Q96M27 445 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ZSWIM3Q96MP5 696 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 SYT17Q9BSW7 474 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ERVMER34-1Q9H9K5 563 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 KLK11Q9UBX7 282 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 ELF5Q9UKW6 265 aaPredicted RBP10.59□□□□□ -0.71
LDLR-208ENST00000558518 SEC16AO15027 2179 aa10.59□□□□□ -0.71
LDLR-208ENST00000558518 LOC100509620A0A075B734 347 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ACOD1A6NK06 481 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 STK25O00506 426 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 KIAA0355O15063 1070 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 NPC1O15118 1278 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 NDUFS4O43181 175 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 KLHL18O94889 574 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SOX30O94993 753 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ADRB1P08588 477 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 GSTM3P21266 225 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 NUDT1P36639 197 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 PUDPQ08623 228 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ST3GAL3Q11203 375 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ZNF155Q12901 538 aaPredicted RBP10.58□□□□□ -0.72
LDLR-208ENST00000558518 FAM46CQ5VWP2 391 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ZNF783Q6ZMS7 281 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 RTTNQ86VV8 2226 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 TOR1AIP2Q8NFQ8 470 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 OR6M1Q8NGM8 313 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 PFN4Q8NHR9 129 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 GOT1L1Q8NHS2 421 aaPredicted RBP10.58□□□□□ -0.72
LDLR-208ENST00000558518 FIBINQ8TAL6 211 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ASB12Q8WXK4 309 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 GHSRQ92847 366 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 CXorf40BQ96DE9 158 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 NDC1Q9BTX1 674 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 VN1R3Q9BXE9 311 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 GNG8Q9UK08 70 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 IGLV3-16A0A075B6K0 115 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 A0A1W2PRQ8 180 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SLC5A10A0PJK1 596 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ANTXRLA6NF34 631 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 AGAP14A8MT82 685 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ZNF593O00488 134 aaPredicted RBP10.58□□□□□ -0.72
LDLR-208ENST00000558518 GDNFP39905 211 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 RAD52P43351 418 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 AKR1C2P52895 323 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 CDK5Q00535 292 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 AKR1C1Q04828 323 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 TCTN1Q2MV58 587 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ELP2Q6IA86 826 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 OR5M10Q6IEU7 315 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SLC8B1Q6J4K2 584 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 TRILQ7L0X0 811 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 CAMKMTQ7Z624 323 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 FAM98AQ8NCA5 519 aaKnown RBP10.58□□□□□ -0.72
LDLR-208ENST00000558518 C1orf216Q8TAB5 229 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SPATA5L1Q9BVQ7 753 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 GSX2Q9BZM3 304 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 FN3KQ9H479 309 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SIRT3Q9NTG7 399 aaPredicted RBP10.58□□□□□ -0.72
LDLR-208ENST00000558518 SDHAF2Q9NX18 166 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SLCO1C1Q9NYB5 712 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 SLC45A1Q9Y2W3 748 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 PCYT1BQ9Y5K3 369 aaPredicted RBP10.58□□□□□ -0.72
LDLR-208ENST00000558518 TRABD2BA6NFA1 517 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 LRRN3E7EW58 273 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 E9PQ18 207 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 QSOX1O00391 747 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 RASGRP1O95267 797 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 CSN2P05814 226 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ICAM2P13598 275 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 ADH7P40394 386 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 PGGHGQ32M88 737 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 PLA1AQ53H76 456 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 HBMQ6B0K9 141 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 APOOLQ6UXV4 268 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 C3P1Q6ZMU1 363 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 NLRC3Q7RTR2 1065 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 TMEFF1Q8IYR6 380 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 OR5J2Q8NH18 312 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 LGALS14Q8TCE9 139 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 UBE2E3Q969T4 207 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 TCEAL4Q96EI5 215 aa10.58□□□□□ -0.72
LDLR-208ENST00000558518 OR14A2Q96R54 314 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms