RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SNTNA6NMZ2 147 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 PAHP00439 452 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 TFPIP10646 304 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 NDUFV2P19404 249 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 TEAD1P28347 426 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 SHC1P29353 583 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 CMPK1P30085 196 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 PRKAR1BP31321 381 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 HCCSP53701 268 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 DSG2Q14126 1118 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 EXOSC7Q15024 291 aaKnown RBP11.99□□□□□ -0.49
LDLR-207ENST00000558013 CDK10Q15131 360 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 ZNF438Q7Z4V0 828 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 SYT9Q86SS6 491 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 LRRC25Q8N386 305 aaPredicted RBP11.99□□□□□ -0.49
LDLR-207ENST00000558013 KLHL36Q8N4N3 616 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 PATE1Q8WXA2 126 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 SNX18Q96RF0 628 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 SDF2Q99470 211 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 SOSTQ9BQB4 213 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 CLEC4AQ9UMR7 237 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 CACNA1IQ9P0X4 2223 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 TRAV27A0A087WT01 109 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 A0A1W2PPK0 400 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 OR6C70A6NIJ9 312 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 RFPL3O75679 317 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 HTR1FP30939 366 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 AGFG1P52594 562 aaKnown RBP11.98□□□□□ -0.49
LDLR-207ENST00000558013 E2F1Q01094 437 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 LCN1P1Q5VSP4 162 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 TRIQKQ629K1 86 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 HEPHL1Q6MZM0 1159 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 PLET1Q6UQ28 207 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 ASB18Q6ZVZ8 466 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 GHDCQ8N2G8 530 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 C19orf18Q8NEA5 215 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 OR51A7Q8NH64 312 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 OR1E3Q8WZA6 343 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 FGF14Q92915 247 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 PTP4A1Q93096 173 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 RFKQ969G6 155 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 GDF15Q99988 308 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 STARD5Q9NSY2 213 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 H2AFY2Q9P0M6 372 aaPredicted RBP11.98□□□□□ -0.49
LDLR-207ENST00000558013 USP36Q9P275 1121 aaKnown RBP11.98□□□□□ -0.49
LDLR-207ENST00000558013 PTGFRNQ9P2B2 879 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 ALG5Q9Y673 324 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 LRRC72A6NJI9 287 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 FAM25AB3EWG3 89 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 FAM25CB3EWG5 89 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 FAM25GB3EWG6 89 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 SEC14L5O43304 696 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 HLA-DPB1P04440 258 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 IL9P15248 144 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 C5AR1P21730 350 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 GDI1P31150 447 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 MAP2K3P46734 347 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 RPS21P63220 83 aaKnown RBP11.98□□□□□ -0.49
LDLR-207ENST00000558013 QPRTQ15274 297 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 CEBPEQ15744 281 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 PAQR7Q86WK9 346 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 RFLNBQ8N5W9 214 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 YIPF7Q8N8F6 280 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 OR10H4Q8NGA5 316 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 OR13C5Q8NGS8 318 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 OR13C2Q8NGS9 318 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 AP3S1Q92572 193 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 CDH10Q9Y6N8 788 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 DENND4AQ7Z401 1863 aa11.98□□□□□ -0.49
LDLR-207ENST00000558013 GTPBP1O00178 669 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 AKAP8O43823 692 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 ADAM11O75078 769 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 IGHA1P01876 353 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 IFI30P13284 250 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 POLR2CP19387 275 aaPredicted RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 S100A1P23297 94 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 STAT5AP42229 794 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 SNRPD2P62316 118 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 PLAURQ03405 335 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 MRPL2Q5T653 305 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 CDC73Q6P1J9 531 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ARL9Q6T311 187 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 PARM1Q6UWI2 310 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ENPP7Q6UWV6 458 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 NOXA1Q86UR1 476 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 C17orf47Q8NEP4 570 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 LILRB4Q8NHJ6 448 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 GRHL3Q8TE85 626 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 DNAJA4Q8WW22 397 aaPredicted RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 TMEM168Q9H0V1 697 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 MTHFD2LQ9H903 347 aaPredicted RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 SIDT1Q9NXL6 827 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 PRSS38A1L453 326 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ANKRD34BA5PLL1 514 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ALAS2P22557 587 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 RPS5P46782 204 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 RPS7P62081 194 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 PPP3R1P63098 170 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 SLC3A1Q07837 685 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 GPM6BQ13491 265 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms