RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CHID1Q9BWS9 393 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 OR8D2Q9GZM6 311 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ADAP2Q9NPF8 381 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 DCAF13Q9NV06 445 aaKnown RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ATAD3AQ9NVI7 634 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF639Q9UID6 485 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF223Q9UK11 482 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 EXO1Q9UQ84 846 aaKnown RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ATG4BQ9Y4P1 393 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 C1orf226A1L170 272 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 C7orf72A4D263 438 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 SAC3D1A6NKF1 404 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 C17orf105B2RV13 164 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 SOCS2O14508 198 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 ACOX3O15254 700 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 WIPF1O43516 503 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 FGF17O60258 216 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 TPST1O60507 370 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 TBX19O60806 448 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 DEAF1O75398 565 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 ZFAND5O76080 213 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 CPSF4O95639 269 aaKnown RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 ABCB1P08183 1280 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 HLCSP50747 726 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 ELAVL1Q15717 326 aaKnown RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 NRF1Q16656 503 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 FLYWCH1Q4VC44 716 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 ARHGAP11AQ6P4F7 1023 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 ZNF621Q6ZSS3 439 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 CLECL1Q8IZS7 167 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 LGI4Q8N135 537 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 TMEM156Q8N614 296 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 SIMC1Q8NDZ2 872 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 DAZLQ92904 295 aaKnown RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 RBM18Q96H35 190 aaKnown RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 SEPHS2Q99611 448 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 TRIM45Q9H8W5 580 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 BEX4Q9NWD9 120 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-230ENST00000557427 ADAM29Q9UKF5 820 aa11.45□□□□□ -0.58
SHMT2-230ENST00000557427 NUP214P35658 2090 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 A0A1W2PPR1 153 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 A0A1W2PR48 441 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 NPIPA2E9PIF3 369 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 NPIPA3F8WFD2 350 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 WWP2O00308 870 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 SYT5O00445 386 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 CLOCKO15516 846 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 TMPRSS11DO60235 418 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 CRLF1O75462 422 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ITGA10O75578 1167 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 KLK1P06870 262 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 FAM58BPP0C7Q3 252 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 DDX5P17844 614 aaKnown RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 C2orf80Q0P641 193 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 VEZF1Q14119 521 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 SERTAD2Q14140 314 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 VMACQ2NL98 169 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 NHSL2Q5HYW2 709 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 Q5PR19 223 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 C6orf52Q5T4I8 152 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 OR52E8Q6IFG1 317 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ANKRD26P1Q6NSI1 321 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 HSDL2Q6YN16 418 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 DGAT2L6Q6ZPD8 337 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 PAGE2Q7Z2X7 111 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ZNF551Q7Z340 670 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ST13P4Q8IZP2 240 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 C10orf111Q8N326 155 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ZCCHC7Q8N3Z6 543 aaKnown RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 CBR4Q8N4T8 237 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 NATD1Q8N6N6 113 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 POGLUT1Q8NBL1 392 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 MORN4Q8NDC4 146 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 OR5M9Q8NGP3 310 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 OR14A16Q8NHC5 309 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ZFP90Q8TF47 636 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 FAM222BQ8WU58 562 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 TANKQ92844 425 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 PPCDCQ96CD2 204 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 SLC47A1Q96FL8 570 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ZNF764Q96H86 408 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 DGAT2Q96PD7 388 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ZNF717Q9BY31 904 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 DEFB127Q9H1M4 99 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 DDX31Q9H8H2 851 aaKnown RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 TPT1P8Q9HAU6 139 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 MS4A12Q9NXJ0 267 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 SH3BP4Q9P0V3 963 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 PHF11Q9UIL8 331 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 PPIEQ9UNP9 301 aaKnown RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 SAMD4AQ9UPU9 718 aaKnown RBP11.44□□□□□ -0.58
SHMT2-230ENST00000557427 ASB4Q9Y574 426 aa11.44□□□□□ -0.58
SHMT2-230ENST00000557427 CHD3Q12873 2000 aaKnown RBP11.43□□□□□ -0.58
SHMT2-230ENST00000557427 SONP18583 2426 aaKnown RBP11.43□□□□□ -0.58
SHMT2-230ENST00000557427 A0A0A6YYD5 115 aa11.43□□□□□ -0.58
SHMT2-230ENST00000557427 DPPA5A6NC42 116 aa11.43□□□□□ -0.58
SHMT2-230ENST00000557427 PGRMC2O15173 223 aa11.43□□□□□ -0.58
SHMT2-230ENST00000557427 OR2J2O76002 312 aa11.43□□□□□ -0.58
SHMT2-230ENST00000557427 GPR75O95800 540 aa11.43□□□□□ -0.58
SHMT2-230ENST00000557427 ACVR2AP27037 513 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms