RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 EMDP50402 254 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 RND3P61587 244 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 GNB2P62879 340 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 HSF2Q03933 536 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 CDKN3Q16667 212 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 METTL11BQ5VVY1 283 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 KDELC1Q6UW63 502 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 ERASQ7Z444 233 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 VPS36Q86VN1 386 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 ZNF573Q86YE8 665 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 BPIFB2Q8N4F0 458 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 CERS5Q8N5B7 392 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 FAM133AQ8N9E0 248 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 DENND6BQ8NEG7 585 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 FBXO30Q8TB52 745 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 FCGR1BQ92637 280 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 NCLNQ969V3 563 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 DHTKD1Q96HY7 919 aaPredicted RBP3.07□□□□□ -1.92
SCFD1-221ENST00000556534 EHD1Q9H4M9 534 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 VAT1LQ9HCJ6 419 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 AATFQ9NY61 560 aaKnown RBP eCLIP3.07□□□□□ -1.92
SCFD1-221ENST00000556534 CHRNA9Q9UGM1 479 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 MFHAS1Q9Y4C4 1052 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 USP16Q9Y5T5 823 aa3.07□□□□□ -1.92
SCFD1-221ENST00000556534 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 FAM230AA0A1W2PPH8 454 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 SAGE2PA6NJ88 616 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 TRIM64CA6NLI5 447 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 E9PLD3 99 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 PDXKO00764 312 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 ZNF861PO60384 105 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 SCRG1O75711 98 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 ACTL6AO96019 429 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 KRT8P05787 483 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 STSP08842 583 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 ANXA4P09525 319 aaPredicted RBP3.06□□□□□ -1.92
SCFD1-221ENST00000556534 PRG2P13727 222 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 CDH5P33151 784 aaPredicted RBP3.06□□□□□ -1.92
SCFD1-221ENST00000556534 ADRA1AP35348 466 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 LIM2P55344 173 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 WNT4P56705 351 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 RPS8P62241 208 aaKnown RBP3.06□□□□□ -1.92
SCFD1-221ENST00000556534 RPL8P62917 257 aaKnown RBP3.06□□□□□ -1.92
SCFD1-221ENST00000556534 CKAP4Q07065 602 aaKnown RBP3.06□□□□□ -1.92
SCFD1-221ENST00000556534 ZNF154Q13106 437 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 KCNJ11Q14654 390 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 KYAT1Q16773 422 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 TMEM52BQ4KMG9 183 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 TEX44Q53QW1 395 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 OR2B11Q5JQS5 317 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 FAM120AOSQ5T036 256 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 SPATA46Q5T0L3 261 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 PVRIGQ6DKI7 326 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 CES3Q6UWW8 571 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 TMEM184AQ6ZMB5 413 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 Q7L0L9 218 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 SERPINA9Q86WD7 417 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 IFNEQ86WN2 208 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 MISPQ8IVT2 679 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 TMEM121Q9BTD3 319 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 MRPL13Q9BYD1 178 aaKnown RBP3.06□□□□□ -1.92
SCFD1-221ENST00000556534 RAB33BQ9H082 229 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 SPRR3Q9UBC9 169 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 FOXJ3Q9UPW0 622 aa3.06□□□□□ -1.92
SCFD1-221ENST00000556534 CHD4Q14839 1912 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 PARD3Q8TEW0 1356 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 LRRC30A6NM36 301 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 LGALS8O00214 317 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 TOM1L1O75674 476 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 IGLV1-47P01700 117 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 PCCBP05166 539 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 RRASP10301 218 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 PAICSP22234 425 aaKnown RBP3.05□□□□□ -1.92
SCFD1-221ENST00000556534 SLC26A2P50443 739 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 OC90Q02509 493 aaPredicted RBP3.05□□□□□ -1.92
SCFD1-221ENST00000556534 BCL2L1Q07817 233 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 LCE3AQ5TA76 89 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 OTPQ5XKR4 325 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 OR5M10Q6IEU7 315 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 ZNF530Q6P9A1 599 aaPredicted RBP3.05□□□□□ -1.92
SCFD1-221ENST00000556534 FRA10AC1Q70Z53 315 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 TRPM8Q7Z2W7 1104 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 LCA5Q86VQ0 697 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 FADS6Q8N9I5 356 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 OR10H4Q8NGA5 316 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 OR9A4Q8NGU2 314 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 SLC5A11Q8WWX8 675 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 THRSPQ92748 146 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 UPRTQ96BW1 309 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 NAP1L5Q96NT1 182 aaPredicted RBP3.05□□□□□ -1.92
SCFD1-221ENST00000556534 ZNF184Q99676 751 aaPredicted RBP3.05□□□□□ -1.92
SCFD1-221ENST00000556534 FICDQ9BVA6 458 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 ZNF416Q9BWM5 594 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 NT5C3AQ9H0P0 336 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 RIBC2Q9H4K1 309 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 CALHM2Q9HA72 323 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 C1orf123Q9NWV4 160 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 EXTL2Q9UBQ6 330 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 RPS6KB2Q9UBS0 482 aa3.05□□□□□ -1.92
SCFD1-221ENST00000556534 ZNF221Q9UK13 617 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms