RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 KIF18BQ86Y91 864 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 VPS37AQ8NEZ2 397 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 FAM222BQ8WU58 562 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 MAELQ96JY0 434 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 OR7D2Q96RA2 312 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 PAIP2Q9BPZ3 127 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 YIPF4Q9BSR8 244 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 NMUR2Q9GZQ4 415 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 PAQR5Q9NXK6 330 aaPredicted RBP14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 NKIRAS1Q9NYS0 192 aa14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 ANKRD17O75179 2603 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-209ENST00000554872 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 SLC22A20A6NK97 555 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 E9PBE3 544 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 TNFSF13O75888 250 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 TGM6O95932 706 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 AGR2O95994 175 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 ALDOCP09972 364 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 ELK4P28324 431 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 EIF1P41567 113 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 ATP12AP54707 1039 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 PHC1P78364 1004 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 LRRC74AQ0VAA2 488 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 FOXF2Q12947 444 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 MYBPHQ13203 477 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 FGFBP1Q14512 234 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 GUSBP1Q15486 140 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 CD226Q15762 336 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 PGS1Q32NB8 556 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 FLYWCH1Q4VC44 716 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 AGBL2Q5U5Z8 902 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 HEPHL1Q6MZM0 1159 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 CHMP1BQ7LBR1 199 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 GALNT10Q86SR1 603 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 CLECL1Q8IZS7 167 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 OTUB1Q96FW1 271 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 PPP1R36Q96LQ0 422 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 CCDC115Q96NT0 180 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 SERHL2Q9H4I8 314 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 RNF122Q9H9V4 155 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 MED17Q9NVC6 651 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 BTNL2Q9UIR0 455 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 PACSIN3Q9UKS6 424 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 PCDHGB4Q9UN71 923 aa14.46□□□□□ -0.09
CCDC88C-209ENST00000554872 RNF103-CHMP3A0A140T963 221 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 A0A1W2PNV4 684 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 H3BNH8 94 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 ETV2O00321 342 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 LINGO3P0C6S8 592 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 FCGR2AP12318 317 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 UQCRC2P22695 453 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 ADH6P28332 368 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 UQCRC1P31930 480 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 KIR2DL3P43628 341 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF41P51814 821 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 SUCLG1P53597 346 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 CLDN20P56880 219 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 KRTAP10-9P60411 292 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 RPS3AP61247 264 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 TXNL4AP83876 142 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 SAXO2Q658L1 398 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 C6orf120Q7Z4R8 191 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 GLB1L3Q8NCI6 653 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 TOR1AIP2Q8NFQ8 470 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 OR5AK3PQ8NH89 298 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 B4GALNT2Q8NHY0 566 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 NEURL3Q96EH8 262 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 ADGRG7Q96K78 797 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 SDF2Q99470 211 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF350Q9GZX5 532 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 MANSC1Q9H8J5 431 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 POLE3Q9NRF9 147 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 GPR45Q9Y5Y3 372 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 MED12LQ86YW9 2145 aa14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 NUP214P35658 2090 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-209ENST00000554872 CCDC168Q8NDH2 2452 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 PCNX3Q9H6A9 2034 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 EEF1E1-BLOC1S5C9J1V9 151 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 H3BML4 177 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 MSTNO14793 375 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 ADAMDEC1O15204 470 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 EEF1E1O43324 174 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 DNAJA2O60884 412 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 CTAG2O75638 210 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 MATN1P21941 496 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 SOAT1P35610 550 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 MAGEA8P43361 318 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 RAC1P63000 192 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF117Q03924 483 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 DAZAP2Q15038 168 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 ZNF141Q15928 474 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 ARHGAP11BQ3KRB8 267 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 FAM174BQ3ZCQ3 159 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 SPANXN4Q5MJ08 99 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 WDR75Q8IWA0 830 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 OR5D16Q8NGK9 328 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 OR4A15Q8NGL6 344 aa14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 INTS12Q96CB8 462 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-209ENST00000554872 ARSGQ96EG1 525 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms