RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RNF128Q8TEB7 428 aa15.04■□□□□ -0
VPS29-204ENST00000548259 LMF2Q9BU23 707 aaKnown RBP15.04■□□□□ -0
VPS29-204ENST00000548259 TMEM185BQ9H7F4 350 aa15.04■□□□□ -0
VPS29-204ENST00000548259 B3GALT5Q9Y2C3 310 aa15.04■□□□□ -0
VPS29-204ENST00000548259 STK38LQ9Y2H1 464 aa15.04■□□□□ -0
VPS29-204ENST00000548259 A0A0J9YW62 118 aa15.03■□□□□ -0
VPS29-204ENST00000548259 A0A1W2PRB8 838 aa15.03■□□□□ -0
VPS29-204ENST00000548259 DPRXA6NFQ7 191 aa15.03■□□□□ -0
VPS29-204ENST00000548259 ELOA3DA6NLF2 546 aaPredicted RBP15.03■□□□□ -0
VPS29-204ENST00000548259 UPK1AO00322 258 aa15.03■□□□□ -0
VPS29-204ENST00000548259 CD8AP01732 235 aa15.03■□□□□ -0
VPS29-204ENST00000548259 YES1P07947 543 aa15.03■□□□□ -0
VPS29-204ENST00000548259 NGFRP08138 427 aa15.03■□□□□ -0
VPS29-204ENST00000548259 INHBAP08476 426 aa15.03■□□□□ -0
VPS29-204ENST00000548259 CSF3P09919 207 aa15.03■□□□□ -0
VPS29-204ENST00000548259 CTAGE8P0CG41 777 aa15.03■□□□□ -0
VPS29-204ENST00000548259 TSPAN8P19075 237 aa15.03■□□□□ -0
VPS29-204ENST00000548259 ZNF763Q0D2J5 394 aa15.03■□□□□ -0
VPS29-204ENST00000548259 C2orf80Q0P641 193 aa15.03■□□□□ -0
VPS29-204ENST00000548259 PPA1Q15181 289 aa15.03■□□□□ -0
VPS29-204ENST00000548259 ELOA3BQ3SY89 546 aa15.03■□□□□ -0
VPS29-204ENST00000548259 LIPNQ5VXI9 398 aa15.03■□□□□ -0
VPS29-204ENST00000548259 GALNT18Q6P9A2 607 aa15.03■□□□□ -0
VPS29-204ENST00000548259 P2RY8Q86VZ1 359 aa15.03■□□□□ -0
VPS29-204ENST00000548259 CTAGE4Q8IX94 777 aa15.03■□□□□ -0
VPS29-204ENST00000548259 SLC43A2Q8N370 569 aa15.03■□□□□ -0
VPS29-204ENST00000548259 ELOA3Q8NG57 546 aa15.03■□□□□ -0
VPS29-204ENST00000548259 FBXO25Q8TCJ0 367 aa15.03■□□□□ -0
VPS29-204ENST00000548259 GPR151Q8TDV0 419 aa15.03■□□□□ -0
VPS29-204ENST00000548259 ABHD3Q8WU67 409 aa15.03■□□□□ -0
VPS29-204ENST00000548259 C1QTNF3Q9BXJ4 246 aa15.03■□□□□ -0
VPS29-204ENST00000548259 CACNG6Q9BXT2 260 aa15.03■□□□□ -0
VPS29-204ENST00000548259 MED17Q9NVC6 651 aa15.03■□□□□ -0
VPS29-204ENST00000548259 POU2F3Q9UKI9 436 aa15.03■□□□□ -0
VPS29-204ENST00000548259 MGAT4BQ9UQ53 548 aa15.03■□□□□ -0
VPS29-204ENST00000548259 WBP11Q9Y2W2 641 aaKnown RBP15.03■□□□□ -0
VPS29-204ENST00000548259 CUBNO60494 3623 aa15.03■□□□□ -0
VPS29-204ENST00000548259 PPP6CO00743 305 aa15.02■□□□□ -0
VPS29-204ENST00000548259 RAD51CO43502 376 aa15.02■□□□□ -0
VPS29-204ENST00000548259 LMX1BO60663 402 aa15.02■□□□□ -0
VPS29-204ENST00000548259 IFI6P09912 130 aa15.02■□□□□ -0
VPS29-204ENST00000548259 TAC1P20366 129 aa15.02■□□□□ -0
VPS29-204ENST00000548259 SFTPDP35247 375 aa15.02■□□□□ -0
VPS29-204ENST00000548259 HSD17B3P37058 310 aa15.02■□□□□ -0
VPS29-204ENST00000548259 C21orf58P58505 322 aa15.02■□□□□ -0
VPS29-204ENST00000548259 RAE1P78406 368 aaKnown RBP15.02■□□□□ -0
VPS29-204ENST00000548259 CLCQ05315 142 aa15.02■□□□□ -0
VPS29-204ENST00000548259 SLC18A2Q05940 514 aa15.02■□□□□ -0
VPS29-204ENST00000548259 SLC29A2Q14542 456 aa15.02■□□□□ -0
VPS29-204ENST00000548259 PLPPR5Q32ZL2 321 aa15.02■□□□□ -0
VPS29-204ENST00000548259 GLE1Q53GS7 698 aaKnown RBP15.02■□□□□ -0
VPS29-204ENST00000548259 SPDYAQ5MJ70 313 aa15.02■□□□□ -0
VPS29-204ENST00000548259 Q6ZT83 130 aa15.02■□□□□ -0
VPS29-204ENST00000548259 GPRIN3Q6ZVF9 776 aa15.02■□□□□ -0
VPS29-204ENST00000548259 TUSC5Q8IXB3 177 aa15.02■□□□□ -0
VPS29-204ENST00000548259 FBXL14Q8N1E6 418 aa15.02■□□□□ -0
VPS29-204ENST00000548259 DEPDC4Q8N2C3 294 aa15.02■□□□□ -0
VPS29-204ENST00000548259 FAM168AQ92567 244 aa15.02■□□□□ -0
VPS29-204ENST00000548259 ELP4Q96EB1 424 aa15.02■□□□□ -0
VPS29-204ENST00000548259 EBPLQ9BY08 206 aa15.02■□□□□ -0
VPS29-204ENST00000548259 ACPTQ9BZG2 426 aa15.02■□□□□ -0
VPS29-204ENST00000548259 TAS2R7Q9NYW3 318 aa15.02■□□□□ -0
VPS29-204ENST00000548259 SCDO00767 359 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 ABCD4O14678 606 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 SUPT7LO94864 414 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 PSMG1O95456 288 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 OXSR1O95747 527 aaPredicted RBP15.01□□□□□ -0.01
VPS29-204ENST00000548259 PSMA4P25789 261 aaKnown RBP15.01□□□□□ -0.01
VPS29-204ENST00000548259 ELK4P28324 431 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 LCN1P31025 176 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 GZMKP49863 264 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 SERPINB9P50453 376 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 TIMM23BQ5SRD1 257 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 TMEM108Q6UXF1 575 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 APOOLQ6UXV4 268 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 RPS27LQ71UM5 84 aaKnown RBP15.01□□□□□ -0.01
VPS29-204ENST00000548259 FCRLAQ7L513 359 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 NUFIP2Q7Z417 695 aaKnown RBP15.01□□□□□ -0.01
VPS29-204ENST00000548259 CEP70Q8NHQ1 597 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 B4GALNT2Q8NHY0 566 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 PROX1Q92786 737 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 APIPQ96GX9 242 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 ZNF382Q96SR6 550 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 GLIPR2Q9H4G4 154 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 EQTNQ9NQ60 294 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 CBLN4Q9NTU7 201 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 KLHL9Q9P2J3 617 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 KCNS2Q9ULS6 477 aa15.01□□□□□ -0.01
VPS29-204ENST00000548259 CR1P17927 2039 aa15□□□□□ -0.01
VPS29-204ENST00000548259 A8MT66 165 aa15□□□□□ -0.01
VPS29-204ENST00000548259 SHISA9B4DS77 424 aa15□□□□□ -0.01
VPS29-204ENST00000548259 RAMP1O60894 148 aa15□□□□□ -0.01
VPS29-204ENST00000548259 PRPS2P11908 318 aa15□□□□□ -0.01
VPS29-204ENST00000548259 CHN1P15882 459 aa15□□□□□ -0.01
VPS29-204ENST00000548259 USF1P22415 310 aaPredicted RBP15□□□□□ -0.01
VPS29-204ENST00000548259 BTKQ06187 659 aa15□□□□□ -0.01
VPS29-204ENST00000548259 SQLEQ14534 574 aa15□□□□□ -0.01
VPS29-204ENST00000548259 TEX35Q5T0J7 233 aa15□□□□□ -0.01
VPS29-204ENST00000548259 KLHL17Q6TDP4 642 aa15□□□□□ -0.01
VPS29-204ENST00000548259 CDRT4Q8N9R6 151 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms