RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 STX16-NPEPL1H3BU86 382 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 STX16O14662 325 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 ABCD4O14678 606 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 NDUFB5O43674 189 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 PSMG1O95456 288 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 IGKV1D-16P01601 117 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 PABPC4LP0CB38 370 aaKnown RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 TSPAN8P19075 237 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 USF1P22415 310 aaPredicted RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 ME2P23368 584 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 TTKP33981 857 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 GPC1P35052 558 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 RAE1P78406 368 aaKnown RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 PPA1Q15181 289 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 STK11Q15831 433 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 PRSS53Q2L4Q9 553 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 PDSS1Q5T2R2 415 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 CPTPQ5TA50 214 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 FAM166AQ6J272 317 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 CREG2Q8IUH2 290 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 POC1BQ8TC44 478 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 C10orf105Q8TEF2 133 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 MRRFQ96E11 262 aaKnown RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 REXO5Q96IC2 774 aaKnown RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 BBS4Q96RK4 519 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 KLHDC3Q9BQ90 382 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 DPH5Q9H2P9 285 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 CBLN4Q9NTU7 201 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 MED17Q9NVC6 651 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 NPAP1Q9NZP6 1156 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 KLHL13Q9P2N7 655 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 RNF14Q9UBS8 474 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 DMGDHQ9UI17 866 aaKnown RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 ZNF225Q9UK10 706 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 MRTO4Q9UKD2 239 aaKnown RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 KCNS2Q9ULS6 477 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 SNX6Q9UNH7 406 aa11.28□□□□□ -0.6
SCAF11-208ENST00000546534 C19orf53Q9UNZ5 99 aaPredicted RBP11.28□□□□□ -0.6
SCAF11-208ENST00000546534 GNG14A0A1W2PPG7 69 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 GXYLT2A0PJZ3 443 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 C7orf72A4D263 438 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 E7EQL1 145 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 UPK1AO00322 258 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 MANBAO00462 879 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 SPRY1O43609 319 aaPredicted RBP11.27□□□□□ -0.61
SCAF11-208ENST00000546534 PCDH7O60245 1069 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 LYZL6O75951 148 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 OTCP00480 354 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 JUNP05412 331 aaKnown RBP11.27□□□□□ -0.61
SCAF11-208ENST00000546534 PGRP06401 933 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 COL6A2P12110 1019 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 SHC1P29353 583 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 GZMKP49863 264 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 PSMD4P55036 377 aaKnown RBP11.27□□□□□ -0.61
SCAF11-208ENST00000546534 CDH13P55290 713 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 CALCOCO2Q13137 446 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 NAB1Q13506 487 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 HEPACAMQ14CZ8 416 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 RNPS1Q15287 305 aaKnown RBP11.27□□□□□ -0.61
SCAF11-208ENST00000546534 ZNHIT3Q15649 155 aaPredicted RBP11.27□□□□□ -0.61
SCAF11-208ENST00000546534 PLPPR5Q32ZL2 321 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 TCHHL1Q5QJ38 904 aaPredicted RBP11.27□□□□□ -0.61
SCAF11-208ENST00000546534 TMEM107Q6UX40 140 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 Q6ZSR9 355 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 TDRPQ86YL5 185 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 LILRA2Q8N149 483 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 PLD6Q8N2A8 252 aaKnown RBP11.27□□□□□ -0.61
SCAF11-208ENST00000546534 GATSQ8NAP1 163 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 OR4C3Q8NH37 302 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 C16orf78Q8WTQ4 265 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 PROX1Q92786 737 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 ZBTB8AQ96BR9 441 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 KLHL15Q96M94 604 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 SRXN1Q9BYN0 137 aa11.27□□□□□ -0.61
SCAF11-208ENST00000546534 SVEP1Q4LDE5 3571 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 GOLGA8QA0A0J9YX86 632 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 LOC100289279A0A1B0GTE1 492 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 GOLGA8OA6NCC3 632 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 MYO1GB0I1T2 1018 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 ALG1L2C9J202 215 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 GOLGA8NF8WBI6 632 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 H7C417 338 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 GOLGA8RI6L899 631 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 PRKD3O94806 890 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 OR4F21O95013 312 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 YES1P07947 543 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 RPS17P08708 135 aaKnown RBP11.26□□□□□ -0.61
SCAF11-208ENST00000546534 TYK2P29597 1187 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 STX2P32856 288 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 GABRA3P34903 492 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 SFTPDP35247 375 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 RNF144AP50876 292 aaPredicted RBP11.26□□□□□ -0.61
SCAF11-208ENST00000546534 ZNF41P51814 821 aaPredicted RBP11.26□□□□□ -0.61
SCAF11-208ENST00000546534 NCBP2P52298 156 aaKnown RBP eCLIP11.26□□□□□ -0.61
SCAF11-208ENST00000546534 MANFP55145 182 aaKnown RBP11.26□□□□□ -0.61
SCAF11-208ENST00000546534 SLC18A2Q05940 514 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 UBAP2Q5T6F2 1119 aaKnown RBP11.26□□□□□ -0.61
SCAF11-208ENST00000546534 Q6ZT83 130 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 FCRLAQ7L513 359 aa11.26□□□□□ -0.61
SCAF11-208ENST00000546534 TRABD2AQ86V40 505 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms