RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 HOXB9P17482 250 aaPredicted RBP11.77□□□□□ -0.52
COL4A6-209ENST00000545689 PRDX1Q06830 199 aaKnown RBP11.77□□□□□ -0.52
COL4A6-209ENST00000545689 EIF2B1Q14232 305 aaKnown RBP11.77□□□□□ -0.52
COL4A6-209ENST00000545689 C3orf38Q5JPI3 329 aa11.77□□□□□ -0.52
COL4A6-209ENST00000545689 ENTPD8Q5MY95 495 aa11.77□□□□□ -0.52
COL4A6-209ENST00000545689 CCSAPQ6IQ19 270 aaPredicted RBP11.77□□□□□ -0.52
COL4A6-209ENST00000545689 DNAJC22Q8N4W6 341 aa11.77□□□□□ -0.52
COL4A6-209ENST00000545689 HORMAD2Q8N7B1 307 aa11.77□□□□□ -0.52
COL4A6-209ENST00000545689 SNAPC3Q92966 411 aa11.77□□□□□ -0.52
COL4A6-209ENST00000545689 PPIL3Q9H2H8 161 aaKnown RBP11.77□□□□□ -0.52
COL4A6-209ENST00000545689 OR52D1Q9H346 318 aa11.77□□□□□ -0.52
COL4A6-209ENST00000545689 BRINP1O60477 761 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 THBS2P35442 1172 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 MAN2A2P49641 1150 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 BCL7AQ4VC05 210 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 HES5Q5TA89 166 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 CARD17Q5XLA6 110 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 AWAT2Q6E213 333 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 ADAMTSL4Q6UY14 1074 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 NOXA1Q86UR1 476 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 RHOXF1Q8NHV9 184 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 SYT3Q9BQG1 590 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 BABAM2Q9NXR7 383 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 KLK4Q9Y5K2 254 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 IER3IP1Q9Y5U9 82 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 TTLL8A6PVC2 850 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 C17orf105B2RV13 164 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 SLC16A6O15403 523 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 SYT7O43581 403 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 HLA-FP30511 346 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 HTR2BP41595 481 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 HBA1P69905 142 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 REEP5Q00765 189 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 RTL6Q6ICC9 239 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 WBP2NLQ6ICG8 309 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 CDC6Q99741 560 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 THAP7Q9BT49 309 aaPredicted RBP11.77□□□□□ -0.53
COL4A6-209ENST00000545689 SMAD9O15198 467 aaKnown RBP11.77□□□□□ -0.53
COL4A6-209ENST00000545689 JUNBP17275 347 aaPredicted RBP11.77□□□□□ -0.53
COL4A6-209ENST00000545689 CCNOP22674 350 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 MECP2P51608 486 aaKnown RBP11.77□□□□□ -0.53
COL4A6-209ENST00000545689 MGAT3Q09327 533 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 MEF2DQ14814 521 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 TP53I3Q53FA7 332 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 PIP5KL1Q5T9C9 394 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 SFRP4Q6FHJ7 346 aaPredicted RBP11.77□□□□□ -0.53
COL4A6-209ENST00000545689 PNPLA1Q8N8W4 532 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 OR13F1Q8NGS4 319 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 ASB17Q8WXJ9 295 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 FAM3CQ92520 227 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 SPTSSAQ969W0 71 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 SORBS1Q9BX66 1292 aaKnown RBP11.77□□□□□ -0.53
COL4A6-209ENST00000545689 PTTG3PQ9NZH4 202 aa11.77□□□□□ -0.53
COL4A6-209ENST00000545689 P04436 131 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 AKAIN1P0CW23 69 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 EIF2S3P41091 472 aaKnown RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 RPS5P46782 204 aaKnown RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 DDX60LQ5H9U9 1706 aaKnown RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 PLPP6Q8IY26 295 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 LAS2Q8IYD9 372 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 LSM14AQ8ND56 463 aaKnown RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 INTS14Q96SY0 518 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 ANKRD19PQ9H560 264 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 CSNK1G3Q9Y6M4 447 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 SRPX2O60687 465 aaPredicted RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 ETV6P41212 452 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 GLO1Q04760 184 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 NFATC4Q14934 902 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 SPCS2Q15005 226 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 SBSNQ6UWP8 590 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 PIWIL3Q7Z3Z3 882 aaKnown RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 CCDC71LQ8N9Z2 235 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 KLHDC9Q8NEP7 349 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 MFSD8Q8NHS3 518 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 PBDC1Q9BVG4 233 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 POT1Q9NUX5 634 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 CDHR4A6H8M9 788 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 ZNF850A8MQ14 1090 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 F5H5P2 479 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 GPRIN2O60269 458 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 RFPL3O75679 317 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 OR7A10O76100 309 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 TFAP2AP05549 437 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 TSFMP43897 325 aaKnown RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 SLC5A12Q1EHB4 618 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 ACSM3Q53FZ2 586 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 LINC00299Q6ZSB3 139 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 FAM217AQ8IXS0 508 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 HRASLS5Q96KN8 279 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 NKX2-4Q9H2Z4 354 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 TMEM38AQ9H6F2 299 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 DDX31Q9H8H2 851 aaKnown RBP11.76□□□□□ -0.53
COL4A6-209ENST00000545689 HCFC1R1Q9NWW0 138 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 PSORS1C1Q9UIG5 152 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 TRAV18A0A075B6X5 111 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 A0A0U1RQS6 177 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 GABRA5P31644 462 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 TNFRSF4P43489 277 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 PCGF3Q3KNV8 242 aa11.76□□□□□ -0.53
COL4A6-209ENST00000545689 FAM69BQ5VUD6 431 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms