RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RDH10Q8IZV5 341 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 KLHL36Q8N4N3 616 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 HCAR2Q8TDS4 363 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 RIPOR3Q96MK2 946 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 PTCHD1Q96NR3 888 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 OR52D1Q9H346 318 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 TAS2R7Q9NYW3 318 aa14.01□□□□□ -0.17
USP28-214ENST00000545540 TMEM129A0AVI4 362 aa14□□□□□ -0.17
USP28-214ENST00000545540 FAM172BPA6NC97 362 aa14□□□□□ -0.17
USP28-214ENST00000545540 EIF4EP06730 217 aaKnown RBP14□□□□□ -0.17
USP28-214ENST00000545540 ALAS2P22557 587 aa14□□□□□ -0.17
USP28-214ENST00000545540 EVX1P49640 407 aa14□□□□□ -0.17
USP28-214ENST00000545540 FXYD6P3P58550 94 aa14□□□□□ -0.17
USP28-214ENST00000545540 ARHGEF6Q15052 776 aa14□□□□□ -0.17
USP28-214ENST00000545540 RPE65Q16518 533 aa14□□□□□ -0.17
USP28-214ENST00000545540 SLC25A35Q3KQZ1 300 aa14□□□□□ -0.17
USP28-214ENST00000545540 CCDC58Q4VC31 144 aa14□□□□□ -0.17
USP28-214ENST00000545540 ZNF322Q6U7Q0 402 aaPredicted RBP14□□□□□ -0.17
USP28-214ENST00000545540 VN1R4Q7Z5H5 301 aa14□□□□□ -0.17
USP28-214ENST00000545540 GDPD1Q8N9F7 314 aa14□□□□□ -0.17
USP28-214ENST00000545540 ORAI3Q9BRQ5 295 aa14□□□□□ -0.17
USP28-214ENST00000545540 IFT27Q9BW83 186 aa14□□□□□ -0.17
USP28-214ENST00000545540 KLHL28Q9NXS3 571 aa14□□□□□ -0.17
USP28-214ENST00000545540 ITGB1BP2Q9UKP3 347 aa14□□□□□ -0.17
USP28-214ENST00000545540 GIMAP1-GIMAP5A0A087WTJ2 511 aa14□□□□□ -0.17
USP28-214ENST00000545540 LINC01553A4QN01 128 aa14□□□□□ -0.17
USP28-214ENST00000545540 CDC123O75794 336 aaPredicted RBP14□□□□□ -0.17
USP28-214ENST00000545540 POLR2CP19387 275 aaPredicted RBP14□□□□□ -0.17
USP28-214ENST00000545540 GSTM3P21266 225 aa14□□□□□ -0.17
USP28-214ENST00000545540 OR12D2P58182 307 aa14□□□□□ -0.17
USP28-214ENST00000545540 HTRA4P83105 476 aaPredicted RBP14□□□□□ -0.17
USP28-214ENST00000545540 BTBD16Q32M84 506 aa14□□□□□ -0.17
USP28-214ENST00000545540 BCL2L15Q5TBC7 163 aa14□□□□□ -0.17
USP28-214ENST00000545540 ZNF620Q6ZNG0 422 aa14□□□□□ -0.17
USP28-214ENST00000545540 RASSF6Q6ZTQ3 369 aa14□□□□□ -0.17
USP28-214ENST00000545540 RAB42Q8N4Z0 105 aa14□□□□□ -0.17
USP28-214ENST00000545540 ZNF485Q8NCK3 441 aa14□□□□□ -0.17
USP28-214ENST00000545540 GIMAP5Q96F15 307 aa14□□□□□ -0.17
USP28-214ENST00000545540 ZNF681Q96N22 645 aa14□□□□□ -0.17
USP28-214ENST00000545540 ZNF649Q9BS31 505 aa14□□□□□ -0.17
USP28-214ENST00000545540 ALG8Q9BVK2 526 aa14□□□□□ -0.17
USP28-214ENST00000545540 PCBD2Q9H0N5 130 aa14□□□□□ -0.17
USP28-214ENST00000545540 BCL2L10Q9HD36 194 aa14□□□□□ -0.17
USP28-214ENST00000545540 FGF20Q9NP95 211 aaPredicted RBP14□□□□□ -0.17
USP28-214ENST00000545540 RASD1Q9Y272 281 aa14□□□□□ -0.17
USP28-214ENST00000545540 HTR2AP28223 471 aa14□□□□□ -0.17
USP28-214ENST00000545540 SRP54P61011 504 aaKnown RBP14□□□□□ -0.17
USP28-214ENST00000545540 DSG2Q14126 1118 aa14□□□□□ -0.17
USP28-214ENST00000545540 ARIH2OSQ8N7S6 290 aa14□□□□□ -0.17
USP28-214ENST00000545540 OR2T33Q8NG76 320 aa14□□□□□ -0.17
USP28-214ENST00000545540 OR4M1Q8NGD0 313 aa14□□□□□ -0.17
USP28-214ENST00000545540 ACOT11Q8WXI4 607 aaPredicted RBP14□□□□□ -0.17
USP28-214ENST00000545540 SNAPC3Q92966 411 aa14□□□□□ -0.17
USP28-214ENST00000545540 SNX18Q96RF0 628 aa14□□□□□ -0.17
USP28-214ENST00000545540 KCNE5Q9UJ90 142 aa14□□□□□ -0.17
USP28-214ENST00000545540 MAU2Q9Y6X3 613 aa14□□□□□ -0.17
USP28-214ENST00000545540 ASCC3Q8N3C0 2202 aaKnown RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 DAPL1A0PJW8 107 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 ERVH48-1M5A8F1 160 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 CTSVO60911 334 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 RFPL3O75679 317 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 CTSBP07858 339 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 CD3GP09693 182 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 PRKCAP17252 672 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 NDUFV2P19404 249 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 PDGFRLQ15198 375 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 NDUFA9Q16795 377 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 LYPD4Q6UWN0 246 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 ENPP7Q6UWV6 458 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 TMEM52Q8NDY8 209 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 OR4D9Q8NGE8 314 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 OR56A1Q8NGH5 318 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 SMARCD2Q92925 531 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 GPR174Q9BXC1 333 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 BTBD1Q9H0C5 482 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 PHPT1Q9NRX4 125 aaPredicted RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 ZNF624Q9P2J8 865 aaPredicted RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 ZNF443Q9Y2A4 671 aaPredicted RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 EXOSC1Q9Y3B2 195 aaKnown RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 FAM171A2A8MVW0 826 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 KDM4EB2RXH2 506 aaPredicted RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 AKAP8O43823 692 aaKnown RBP13.99□□□□□ -0.17
USP28-214ENST00000545540 HLA-DPB1P04440 258 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 PKLRP30613 574 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 PPP2CBP62714 309 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 PPP2CAP67775 309 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 RUNX2Q13950 521 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 ZIC1Q15915 447 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 OTPQ5XKR4 325 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 PPP2R2DQ66LE6 453 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 BHLHB9Q6PI77 547 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 SSX6Q7RTT6 188 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 AP3S1Q92572 193 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 SLX1AQ9BQ83 275 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 IRF2BPLQ9H1B7 796 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 FN3KQ9H479 309 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 SNTNA6NMZ2 147 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 RGS13O14921 159 aa13.99□□□□□ -0.17
USP28-214ENST00000545540 FCER2P06734 321 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms