RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TIMM22Q9Y584 194 aa15.83■□□□□ 0.12
CLSTN3-214ENST00000542663 SVEP1Q4LDE5 3571 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 IGHV4-30-2A0A087WSY4 118 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 NDUFB5O43674 189 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 RAMP1O60894 148 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 KCNH1O95259 989 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 SLC29A2Q14542 456 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 KRTAP24-1Q3LI83 254 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 ZAR1Q86SH2 424 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 DTX2Q86UW9 622 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 TUSC5Q8IXB3 177 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 ACTRT2Q8TDY3 377 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 HS6ST2Q96MM7 605 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 SRXN1Q9BYN0 137 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 GRIP2Q9C0E4 1043 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 C3orf14Q9HBI5 128 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 NGBQ9NPG2 151 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 EQTNQ9NQ60 294 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 MIEF1Q9NQG6 463 aa15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 HEATR1Q9H583 2144 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-214ENST00000542663 SERTM1A2A2V5 107 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 SHISA9B4DS77 424 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 TRIM49D1C9J1S8 452 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 SSX4O60224 188 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 DLX3O60479 287 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 NKX2-2O95096 273 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 ADAP00813 363 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 NGFRP08138 427 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 IL32P24001 234 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 NTSP30990 170 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 SERPINB9P50453 376 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 CARD18P57730 90 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 SLC7A5Q01650 507 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 TMEM201Q5SNT2 666 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 TEX35Q5T0J7 233 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 GTF2IRD2BQ6EKJ0 949 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 GTF2IRD2Q86UP8 949 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 TRABD2AQ86V40 505 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 LILRA2Q8N149 483 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 BANPQ8N9N5 519 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 GPR151Q8TDV0 419 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 DCAKDQ8WVC6 231 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 KLHL15Q96M94 604 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 BARX1Q9HBU1 254 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 MYNNQ9NPC7 610 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 CISD1Q9NZ45 108 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 KLHL13Q9P2N7 655 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 B3GALT5Q9Y2C3 310 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 SNX8Q9Y5X2 465 aa15.81■□□□□ 0.12
CLSTN3-214ENST00000542663 TTC36A6NLP5 189 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 ZNF814B7Z6K7 855 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 EFNA2O43921 213 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 IFI6P09912 130 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 LINGO3P0C6S8 592 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 PTNP21246 168 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 ME2P23368 584 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 SFTPDP35247 375 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 ZNF41P51814 821 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 FOXA1P55317 472 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 C21orf58P58505 322 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 GLE1Q53GS7 698 aaKnown RBP15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 PDSS1Q5T2R2 415 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 ZNF551Q7Z340 670 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 RELL1Q8IUW5 271 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 OR10H5Q8NGA6 315 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 FAM110BQ8TC76 370 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 KISS1RQ969F8 398 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 SH3YL1Q96HL8 342 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 POTEKPQ9BYX7 375 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 TMEM216Q9P0N5 145 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 CDC42EP3Q9UKI2 254 aa15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 POLR3HQ9Y535 204 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-214ENST00000542663 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 ENO1P06733 434 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 ACP2P11117 423 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 IMPDH1P20839 514 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 MANFP55145 182 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 ITGADQ13349 1161 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 RNPS1Q15287 305 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 CD226Q15762 336 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 TMEM249Q2WGJ8 235 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 SPDYAQ5MJ70 313 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 BHLHA15Q7RTS1 189 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 CPNE4Q96A23 557 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 GIMAP5Q96F15 307 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 RHNO1Q9BSD3 238 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 CDC42EP4Q9H3Q1 356 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 ALG2Q9H553 416 aa15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 NUP214P35658 2090 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-214ENST00000542663 FAM234BA2RU67 622 aa15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 KCNK2O95069 426 aa15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 PABPC4LP0CB38 370 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 PRPS2P11908 318 aa15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 PRIM2P49643 509 aa15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 PKNOX1P55347 436 aa15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 IRX1P78414 480 aaPredicted RBP15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 FOXF1Q12946 379 aa15.78■□□□□ 0.12
CLSTN3-214ENST00000542663 HSPB3Q12988 150 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms