RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 IFT52Q9Y366 437 aa15.64■□□□□ 0.09
LIG1-204ENST00000542460 GPC6Q9Y625 555 aaPredicted RBP15.64■□□□□ 0.09
LIG1-204ENST00000542460 BOD1L1Q8NFC6 3051 aa15.64■□□□□ 0.09
LIG1-204ENST00000542460 PINLYPA6NC86 204 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 HSD17B1P14061 328 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 ELAVL4P26378 380 aaKnown RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 KCNJ10P78508 379 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 FGFBP1Q14512 234 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 LARS2Q15031 903 aaKnown RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 CD226Q15762 336 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 FNDC7Q5VTL7 733 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 TIGD3Q6B0B8 471 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 CCDC80Q76M96 950 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 EIF3MQ7L2H7 374 aaKnown RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 HMGN2P46Q86SG4 172 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 GATSQ8NAP1 163 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 OR1J4Q8NGS1 313 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 PHOSPHO1Q8TCT1 267 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 WDR60Q8WVS4 1066 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 GMPR2Q9P2T1 348 aaKnown RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 ANAPC2Q9UJX6 822 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 PACSIN3Q9UKS6 424 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 BAHCC1Q9P281 2608 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 M0QX08 132 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 GTPBP1O00178 669 aaKnown RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 SNPHO15079 494 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 GSTA4O15217 222 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 GCM2O75603 506 aaPredicted RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 SORBS2O94875 1100 aaKnown RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 THBS1P07996 1170 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 PABPC4LP0CB38 370 aaKnown RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 NID1P14543 1247 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 HTR1EP28566 365 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 PLGLB1Q02325 96 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 NFATC3Q12968 1075 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 INPP5JQ15735 1006 aaPredicted RBP15.63■□□□□ 0.09
LIG1-204ENST00000542460 HYAL4Q2M3T9 481 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 LIN52Q52LA3 116 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 ZNF311Q5JNZ3 666 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 OR5M10Q6IEU7 315 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 PLCZ1Q86YW0 608 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 CMIPQ8IY22 773 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 WDSUB1Q8N9V3 476 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 TTTY12Q9BZ98 90 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 SLC35A3Q9Y2D2 325 aa15.63■□□□□ 0.09
LIG1-204ENST00000542460 TLN1Q9Y490 2541 aaKnown RBP15.62■□□□□ 0.09
LIG1-204ENST00000542460 EXPH5Q8NEV8 1989 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 IGLV3-32A0A0A0MS00 114 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 LRRC3CA6NJW4 275 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 GNB5O14775 395 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 CBR3O75828 277 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 CSTAP01040 98 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 UBL4AP11441 157 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 TCN1P20061 433 aaPredicted RBP15.62■□□□□ 0.09
LIG1-204ENST00000542460 MSX1P28360 303 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 RNF144AP50876 292 aaPredicted RBP15.62■□□□□ 0.09
LIG1-204ENST00000542460 CEACAM7Q14002 265 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 ZSWIM7Q19AV6 140 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 SLC22A16Q86VW1 577 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 VRK2Q86Y07 508 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 ARMC8Q8IUR7 673 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 GNRHR2Q96P88 292 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 TAAR6Q96RI8 345 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 ARMC7Q9H6L4 198 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 B4GALT7Q9UBV7 327 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 SEC14L3Q9UDX4 400 aa15.62■□□□□ 0.09
LIG1-204ENST00000542460 ZNF443Q9Y2A4 671 aaPredicted RBP15.62■□□□□ 0.09
LIG1-204ENST00000542460 FASNP49327 2511 aaKnown RBP15.62■□□□□ 0.09
LIG1-204ENST00000542460 ACOT7O00154 380 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 CXCR6O00574 342 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 ZNF264O43296 627 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 EIF4E2O60573 245 aaKnown RBP15.61■□□□□ 0.09
LIG1-204ENST00000542460 GMNNO75496 209 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 C1QL1O75973 258 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 GLSO94925 669 aaPredicted RBP15.61■□□□□ 0.09
LIG1-204ENST00000542460 MFN2O95140 757 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 IFNA14P01570 189 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 CRYABP02511 175 aaKnown RBP15.61■□□□□ 0.09
LIG1-204ENST00000542460 KDELR2P33947 212 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 RFC3P40938 356 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 PMP22Q01453 160 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 C19orf57Q0VDD7 668 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 COLEC12Q5KU26 742 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 RNF220Q5VTB9 566 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 ZNF771Q7L3S4 317 aaPredicted RBP15.61■□□□□ 0.09
LIG1-204ENST00000542460 FAM156AQ8NDB6 213 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 BHLHE22Q8NFJ8 381 aaPredicted RBP15.61■□□□□ 0.09
LIG1-204ENST00000542460 FIG4Q92562 907 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 DTNBP1Q96EV8 351 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 THTPAQ9BU02 230 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 CARD8Q9Y2G2 431 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 BSNQ9UPA5 3926 aa15.61■□□□□ 0.09
LIG1-204ENST00000542460 CLDN24A6NM45 220 aa15.6■□□□□ 0.09
LIG1-204ENST00000542460 C17orf51A8MQB3 221 aa15.6■□□□□ 0.09
LIG1-204ENST00000542460 HCRTR2O43614 444 aa15.6■□□□□ 0.09
LIG1-204ENST00000542460 DNAJC8O75937 253 aaPredicted RBP15.6■□□□□ 0.09
LIG1-204ENST00000542460 RFPL3SP0C7P2 107 aa15.6■□□□□ 0.09
LIG1-204ENST00000542460 ZNF24P17028 368 aa15.6■□□□□ 0.09
LIG1-204ENST00000542460 GGT1P19440 569 aa15.6■□□□□ 0.09
LIG1-204ENST00000542460 PRKAR1BP31321 381 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms