RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 EMDP50402 254 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 FXYD6P3P58550 94 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 RPS15AP62244 130 aaKnown RBP15.71■□□□□ 0.11
USP28-208ENST00000540438 SLC3A1Q07837 685 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 SNAP47Q5SQN1 464 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 TMEM64Q6YI46 380 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 CSNK1A1LQ8N752 337 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 SRFBP1Q8NEF9 429 aaKnown RBP15.71■□□□□ 0.11
USP28-208ENST00000540438 OR52R1Q8NGF1 315 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 TOE1Q96GM8 510 aaKnown RBP15.71■□□□□ 0.11
USP28-208ENST00000540438 ZFYVE21Q9BQ24 234 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 BCL7BQ9BQE9 202 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 MIXL1Q9H2W2 232 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 OR52D1Q9H346 318 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 UBQLN3Q9H347 655 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 ZNF232Q9UNY5 417 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 C12orf71A8MTZ7 269 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 MAOAP21397 527 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 TEAD1P28347 426 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 TLX1P31314 330 aaPredicted RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 SLC1A3P43003 542 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 ZNF136P52737 540 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 LIMK1P53667 647 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 TRA2BP62995 288 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 RHAGQ02094 409 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 TSPAN31Q12999 210 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 OR1Q1Q15612 314 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 TIMM50Q3ZCQ8 353 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 AGAP7PQ5VUJ5 663 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 CCDC190Q86UF4 302 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 ATP6V1C2Q8NEY4 427 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 GNPDA2Q8TDQ7 276 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 SPACA7Q96KW9 195 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 MS4A4EQ96PG1 132 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 KATNB1Q9BVA0 655 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 NDUFB11Q9NX14 153 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 PAIP2BQ9ULR5 123 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 PRR19A6NJB7 356 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 SLC9B1P1A6NJY1 282 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 PRODHO43272 600 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 MAGEB1P43366 347 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 MLC1Q15049 377 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 RSBN1Q5VWQ0 802 aaPredicted RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 ARL9Q6T311 187 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 PPIL3Q9H2H8 161 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 DDX28Q9NUL7 540 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 OBP2AQ9NY56 170 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 MSRAQ9UJ68 235 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 FABP12A6NFH5 140 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 MRPS14O60783 128 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 KCNAB1Q14722 419 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 NKAIN2Q5VXU1 208 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 UBASH3BQ8TF42 649 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 ACOT11Q8WXI4 607 aaPredicted RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 MRPL38Q96DV4 380 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 ZSCAN32Q9NX65 697 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 PLEKHB1Q9UF11 243 aaPredicted RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 PILRAQ9UKJ1 303 aa15.7■□□□□ 0.1
USP28-208ENST00000540438 DIMT1Q9UNQ2 313 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 PRRC2CQ9Y520 2896 aaKnown RBP15.7■□□□□ 0.1
USP28-208ENST00000540438 A0A0B4J203 849 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 HYKKA2RU49 373 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 ZNF670-ZNF695F2Z2N8 137 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 SURF4O15260 269 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 SEMA4FO95754 770 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 COPZ1P61923 177 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 PLAURQ03405 335 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 SF3B4Q15427 424 aaKnown RBP eCLIP15.69■□□□□ 0.1
USP28-208ENST00000540438 GABRG3Q99928 467 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 SEC14L4Q9UDX3 406 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 LIPT1Q9Y234 373 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 WBP11Q9Y2W2 641 aaKnown RBP15.69■□□□□ 0.1
USP28-208ENST00000540438 V9GYH0 126 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 ARRDC5A6NEK1 342 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 PPP1R3DO95685 299 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 CCR4P51679 360 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 ZNF267Q14586 743 aaPredicted RBP15.69■□□□□ 0.1
USP28-208ENST00000540438 OCLNQ16625 522 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 AKAP14Q86UN6 197 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 ARHGDIGQ99819 225 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 CACYBPQ9HB71 228 aaKnown RBP15.69■□□□□ 0.1
USP28-208ENST00000540438 KLHL1Q9NR64 748 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 CCDC59Q9P031 241 aaKnown RBP15.69■□□□□ 0.1
USP28-208ENST00000540438 SLC22A7Q9Y694 548 aa15.69■□□□□ 0.1
USP28-208ENST00000540438 CDC14CA4D256 554 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 TGFBR3LH3BV60 316 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 CCNKO75909 580 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 THEGLP0DJG4 465 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 LTBRP36941 435 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 NAA10P41227 235 aaPredicted RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 ANXA11P50995 505 aaKnown RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 CTBP2P56545 445 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 HHEXQ03014 270 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 COX10Q12887 443 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 PGGHGQ32M88 737 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 ZNF620Q6ZNG0 422 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 CXXC5Q7LFL8 322 aaKnown RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 FANK1Q8TC84 345 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 TNFRSF13CQ96RJ3 184 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 KLHDC3Q9BQ90 382 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms