RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ZNHIT3Q15649 155 aaPredicted RBP10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 ZNF239Q16600 458 aaKnown RBP10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 GRAMD1BQ3KR37 738 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 FAM120AOSQ5T036 256 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 C11orf71Q6IPW1 123 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 Q6ZSR9 355 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 SSX8Q7RTT4 187 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 TRABD2AQ86V40 505 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 TDRPQ86YL5 185 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 LILRA2Q8N149 483 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 PLD6Q8N2A8 252 aaKnown RBP10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 ZNF525Q8N782 197 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 SPATA4Q8NEY3 305 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 C10orf105Q8TEF2 133 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 C16orf78Q8WTQ4 265 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 SLC9A6Q92581 669 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 MUCL1Q96DR8 90 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 KLHL15Q96M94 604 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 RNF145Q96MT1 663 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 LMF2Q9BU23 707 aaKnown RBP10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 VPS11Q9H270 941 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 TMEM185BQ9H7F4 350 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 MANSC1Q9H8J5 431 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 C3orf14Q9HBI5 128 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 CBLN4Q9NTU7 201 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 MED17Q9NVC6 651 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 KCNS2Q9ULS6 477 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 NFU1Q9UMS0 254 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 FREM1Q5H8C1 2179 aa10.3□□□□□ -0.76
CLSTN3-209ENST00000539982 GOLGA8QA0A0J9YX86 632 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 GOLGA8OA6NCC3 632 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 TTC36A6NLP5 189 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 ALG1L2C9J202 215 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 E7EQL1 145 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 GOLGA8NF8WBI6 632 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 GOLGA8RI6L899 631 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 MANBAO00462 879 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 SMIM24O75264 130 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 KCNH1O95259 989 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 IGKV1D-16P01601 117 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 JUNP05412 331 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 RPS17P08708 135 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 GABRA3P34903 492 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 ZNF41P51814 821 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 NCBP2P52298 156 aaKnown RBP eCLIP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 MANFP55145 182 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 CDH13P55290 713 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 MRPS25P82663 173 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 C2orf54Q08AI8 447 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 SQLEQ14534 574 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 PLPPR5Q32ZL2 321 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 FAM166AQ6J272 317 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 TMEM107Q6UX40 140 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 Q6ZT83 130 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 IL17RELQ6ZVW7 336 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 RPS27LQ71UM5 84 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 OR2L13Q8N349 312 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 CDYL2Q8N8U2 506 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 OR4C3Q8NH37 302 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 POC1BQ8TC44 478 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 ZNF483Q8TF39 744 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 HTRA1Q92743 480 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 CPNE4Q96A23 557 aaPredicted RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 ELP4Q96EB1 424 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 DHRS9Q9BPW9 319 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 ERP44Q9BS26 406 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 DPH5Q9H2P9 285 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 DDX18Q9NVP1 670 aaKnown RBP10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 ZNF225Q9UK10 706 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 MALRD1Q5VYJ5 2156 aa10.29□□□□□ -0.76
CLSTN3-209ENST00000539982 LOC100289279A0A1B0GTE1 492 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 GXYLT2A0PJZ3 443 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 SLC35F4A4IF30 521 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 H7C417 338 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 ULK1O75385 1050 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 LYZL6O75951 148 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 OR4F21O95013 312 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 KRT6AP02538 564 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 KRT6BP04259 564 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 NGFRP08138 427 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 CSF3P09919 207 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 CHN1P15882 459 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 TSPAN8P19075 237 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 DDCP20711 480 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 HNF1AP20823 631 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 EIF1P41567 113 aaKnown RBP10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 MAGEA4P43358 317 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 GSTM5P46439 218 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 KRT6CP48668 564 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 SERPINB8P50452 374 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 SLC18A2Q05940 514 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 ACSM2AQ08AH3 577 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 SLC29A2Q14542 456 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 STK11Q15831 433 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 PRSS53Q2L4Q9 553 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 SPIN4Q56A73 249 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 TIMM23BQ5SRD1 257 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 TEX35Q5T0J7 233 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 FAM219BQ5XKK7 198 aa10.28□□□□□ -0.76
CLSTN3-209ENST00000539982 ACSM2BQ68CK6 577 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms