RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 OR8J3Q8NGG0 315 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 FBXO27Q8NI29 283 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 ADAMTS15Q8TE58 950 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 PTPMT1Q8WUK0 201 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 NCLNQ969V3 563 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 VMP1Q96GC9 406 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 SENP5Q96HI0 755 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 BDH2Q9BUT1 245 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 OR10A5Q9H207 317 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 ANKRA2Q9H9E1 313 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 NANOGQ9H9S0 305 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC6A13Q9NSD5 602 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC25A37Q9NYZ2 338 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 C19orf53Q9UNZ5 99 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 TRIM64A6NGJ6 449 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 TRIM64BA6NI03 449 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CLCA1A8K7I4 914 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 ITGA10O75578 1167 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 DNAJC8O75937 253 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 STAMBPO95630 424 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 HMGN2P05204 90 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CELA3AP09093 270 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 ALOX5P09917 674 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 ASCL1P50553 236 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CLCN2P51788 898 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CASP9P55211 416 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 NCALDP61601 193 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 FUT7Q11130 342 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 FADDQ13158 208 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 SAXO2Q658L1 398 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 TNFAIP8L2Q6P589 184 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 C16orf47Q6ZP98 133 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 IFNEQ86WN2 208 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CDRT4Q8N9R6 151 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 PSD4Q8NDX1 1056 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 LINC01560Q8TB33 94 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 FBXO30Q8TB52 745 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC9A6Q92581 669 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CTHRC1Q96CG8 243 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 NEURL3Q96EH8 262 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 GAL3ST4Q96RP7 486 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CDRT15Q96T59 188 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 PIP5K1AQ99755 562 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 CPPED1Q9BRF8 314 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 YIPF4Q9BSR8 244 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 THTPAQ9BU02 230 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 ACTRT3Q9BYD9 372 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 DEFB126Q9BYW3 111 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 TTTY12Q9BZ98 90 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 OR51I1Q9H343 314 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 TIMMDC1Q9NPL8 285 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 TAS2R1Q9NYW7 299 aa11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 ZNF223Q9UK11 482 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 PRPF19Q9UMS4 504 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-208ENST00000538933 DSCAMO60469 2012 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 TRBV11-1A0A0K0K1C0 115 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 TUBAL3A6NHL2 446 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 DUXAA6NLW8 204 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 OR6C76A6NM76 312 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 FAM47E-STBD1D6RA91 191 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 FXYD1O00168 92 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 HRKO00198 91 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 GSTA4O15217 222 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 SUSD5O60279 629 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 GMNNO75496 209 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 GOSR1O95249 250 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 CBX7O95931 251 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 AGR2O95994 175 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 ENDOUP21128 410 aaKnown RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC6A2P23975 617 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 PTPN6P29350 595 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 CEACAM8P31997 349 aaPredicted RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 PGM1P36871 562 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 DSTNP60981 165 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 RPS26P62854 115 aaKnown RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 TXNL4AP83876 142 aaKnown RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 KRTAP1-1Q07627 177 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 MGAT2Q10469 447 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 RABL3Q5HYI8 236 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 SAMD4BQ5PRF9 694 aaKnown RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 GCNT6Q5T4J0 391 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 ATAD3BQ5T9A4 648 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 FBXW10Q5XX13 1052 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 MFSD12Q6NUT3 480 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 CDC73Q6P1J9 531 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 ZCCHC12Q6PEW1 402 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 P3H2Q8IVL5 708 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 MSRB3Q8IXL7 192 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 TMEM156Q8N614 296 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 TMEM251Q8N6I4 163 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 TNIP2Q8NFZ5 429 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 OR10A6Q8NH74 314 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 ZNF721Q8TF20 911 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC7A6OSQ96CW6 309 aaPredicted RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 KCTD14Q9BQ13 255 aaPredicted RBP11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 LRMDAQ9H2I8 198 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 PIF1Q9H611 641 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 FOLH1BQ9HBA9 442 aa11.37□□□□□ -0.59
CLSTN3-208ENST00000538933 EXD2Q9NVH0 621 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms