RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 OR5M10Q6IEU7 315 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PAMR1Q6UXH9 720 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 TFAP2EQ6VUC0 442 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 DNM1P46Q6ZS02 220 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 LANCL3Q6ZV70 420 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 APOBEC3FQ8IUX4 373 aaKnown RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 CCDC50Q8IVM0 306 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 SLC34A3Q8N130 599 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 NFAM1Q8NET5 270 aaPredicted RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 OR5AU1Q8NGC0 362 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 OR9A1PQ8NGU1 263 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 CNIH3Q8TBE1 160 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PNPT1Q8TCS8 783 aaKnown RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 MAIP1Q8WWC4 291 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 TMEM80Q96HE8 168 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 MS4A14Q96JA4 679 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 TSGA13Q96PP4 275 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 OR5B2Q96R09 309 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 NXF5Q9H1B4 397 aaKnown RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 PTGES2Q9H7Z7 377 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 COQ10BQ9H8M1 238 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PDFQ9HBH1 243 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 SLC35D1Q9NTN3 355 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 TMOD2Q9NZR1 351 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 C6orf203Q9P0P8 240 aaPredicted RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 MBD2Q9UBB5 411 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 EPS15L1Q9UBC2 864 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 PDE10AQ9Y233 779 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 WDR45Q9Y484 360 aa2.04□□□□□ -2.08
CD44-238ENST00000534296 KLF2Q9Y5W3 355 aaPredicted RBP2.04□□□□□ -2.08
CD44-238ENST00000534296 A0A1W2PQ72 361 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 B4DXG7 233 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 E7ESA3 106 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 HIP1O00291 1037 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 WWP2O00308 870 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 SLC17A2O00624 439 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CPLX1O14810 134 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 TM9SF1O15321 606 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CHADO15335 359 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 UGT2B17O75795 530 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 KIAA0754O94854 1291 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 TOXO94900 526 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 UGT2B4P06133 528 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CD55P08174 381 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 RNH1P13489 461 aaKnown RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 CCDC130P13994 396 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 ZBTB25P24278 435 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 HOXD10P28358 340 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 YWHABP31946 246 aaKnown RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 GCKP35557 465 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CHI3L1P36222 383 aaPredicted RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 MDH2P40926 338 aaKnown RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 OR3A4PP47883 348 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 EFNA3P52797 238 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 TIMM10P62072 90 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CXCL6P80162 114 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 NDPQ00604 133 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 PDK4Q16654 411 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CDKN3Q16667 212 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 KYAT1Q16773 422 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 SLC36A3Q495N2 470 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 TMEM184AQ6ZMB5 413 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 ARCQ7LC44 396 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 ANKRD37Q7Z713 158 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 NRMQ8IXM6 262 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 ZNF100Q8IYN0 542 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 TEX9Q8N6V9 391 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 FADS6Q8N9I5 356 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 OR2L5Q8NG80 312 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 AENQ8WTP8 325 aaKnown RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 TCTEX1D2Q8WW35 142 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CTNNBL1Q8WYA6 563 aaPredicted RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 RSPH1Q8WYR4 309 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 MARC2Q969Z3 335 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 FGGYQ96C11 551 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 FAF2Q96CS3 445 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 NTNG2Q96CW9 530 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 PAXXQ9BUH6 204 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 TEX13BQ9BXU2 312 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 DUSP16Q9BY84 665 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 KRTAP4-3Q9BYR4 195 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 DEFB126Q9BYW3 111 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 LIN28AQ9H9Z2 209 aaKnown RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 PALMDQ9NP74 551 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 UTP6Q9NYH9 597 aaKnown RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 CLEC4EQ9ULY5 219 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 MRPS7Q9Y2R9 242 aaKnown RBP2.03□□□□□ -2.08
CD44-238ENST00000534296 PLLPQ9Y342 182 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 OARD1Q9Y530 152 aa2.03□□□□□ -2.08
CD44-238ENST00000534296 CUX2O14529 1486 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 SF3B1O75533 1304 aaKnown RBP eCLIP2.02□□□□□ -2.09
CD44-238ENST00000534296 KLF18A0A0U1RQI7 1052 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 A0A1B0GUL7 405 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 RNF222A6NCQ9 220 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 FRG2CA6NGY1 282 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 SAGE2PA6NJ88 616 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 PCP4L1A6NKN8 68 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 E7ENQ6 273 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 FCN1O00602 326 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 HDAC3O15379 428 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms